BAC Information

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BAC

Clone NameMSMg01-292K04
Chromosome4 (Build37)
Map Location 54,870,928 - 54,871,293
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem38b, LOC670124, LOC100041280, LOC666901, LOC100041303, LOC384018
Downstream geneEG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348, Klf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292K04.T7 (MSMg01no292_k04.b1)MSMg01-292K04.TJ (MSMg01no292_k04.g1)
ACCAG421304AG421305
length738740
length of high quality
(start - end)
371 (46 - 416)608 (77 - 684)
definitionCHROMAT_FILE: MSMg01no292_k04.b1 PHD_FILE: MSMg01no292_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:45 2005CHROMAT_FILE: MSMg01no292_k04.g1 PHD_FILE: MSMg01no292_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTGTATCAGGATACCTTTCATCAGGAGAGCACTGTCCACCAG
CCCAGCCTCTGTCCTTTCTTAGCGACAGAAATCAACCTGCAACAGAACAT
TAGTTATAGTTTACCTTGAGCCAGGCTCTGTGCTGAGAGCTTCACCTACA
TTATGCATTCTGTCCTTAGATACTTTGGAGGTCCTTTTATAACCTCTTAG
GAGTAAGAACTTCTGGAAGCTGTCCCGGGACAGATATTGACTAAGTAGTA
ATTGCAGAATTCAAAGCATGTATATTCTCGCCCCAGCTCTTATCAACTGC
CATGGCTTCTTTTTTTTACCCCCCGCCCACCAGGACTTGGGTACCTGCCC
TTTTCTGTCTCCACCTCTTTTTCAGCAAACATGTCTGCTCCTGCTTACTC
AACTCTCTTGGGTGATTCAGCTATCAAGCTAGGTCTCCCTGATTATGGAG
GGGACAGGGAAGGCAGACTTCAGGGAAATGCTTTCCTTTTCTCCTTTCTA
AACGCTGGTGTTCCAAGACTCTGGCAGACGGGCAGTTAATGAACACTGGA
CTATAGGACTAGGAAGCACACCCACAACTGGCTGCTTGGCTAATGGAGAC
ATATTACATATCTCAGAAGCTTGTCCCGGGTCTCTGGGGACAGGGAGCCT
CTCTTGGTAAACAGCTGGGTTACCACATTTGCCGCCCT
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCAAATCCTAGGATACCCAAGATAAAAGATACAATTTC
CTAAACACATGAAACTCAAGAAAAATGAACACCTGAAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_k04.b1 MSMg01no292_k04.b1 CHROMAT_FILE:
MSMg01no292_k04.b1 PHD_FILE: MSMg01no292_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:45 2005
         (371 letters)



>mm_chr4_54870555_54871325
          Length = 771

 Score =  630 bits (326), Expect = 0.0
 Identities = 356/366 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttgtgtatcaggatacctttcatcaggagagcactgtccaccagcccagcct 63
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ggaattctttgtggatgaggatacctttcatcaggagagcactgtccaccagcccagcct 680

                                                                       
Query: 64  ctgtcctttcttagcgacagaaatcaacctgcaacagaacattagttatagtttaccttg 123
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctgtcctttcttagggacagaaatcaacctgcaacagaacattagttatagtttaccttg 620

                                                                       
Query: 124 agccaggctctgtgctgagagcttcacctacattatgcattctgtccttagatactttgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agccaggctctgtgctgagagcttcacctacattatgcattctgtccttagatactttgg 560

                                                                       
Query: 184 aggtccttttataacctcttaggagtaagaacttctggaagctgtcccgggacagatatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aggtccttttataacctcttaggagtaagaacttctggaagctgtcccgggacagatatt 500

                                                                       
Query: 244 gactaagtagtaattgcagaattcaaagcatgtatattctcgccccagctcttatcaact 303
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 499 gactaagtagtaattgcagaattcaaagcatgtacattctcgccccagctcttatcaact 440

                                                                       
Query: 304 gccatggcttcttttttttaccccccgcccaccaggacttgggtacctgcccttttctgt 363
           |||||||||||||| | |||||||| |  ||| |||||||||||||||||||||||||||
Sbjct: 439 gccatggcttctttctcttaccccctggacacaaggacttgggtacctgcccttttctgt 380

                 
Query: 364 ctccac 369
           ||||||
Sbjct: 379 ctccac 374


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)