BAC Information

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BAC

Clone NameMSMg01-292L06
Chromosome4 (Build37)
Map Location 52,457,987 - 52,458,292
singlet/doubletsinglet
Overlap geneSmc2
Upstream geneLOC384015, LOC100041026, LOC100041038, LOC666724
Downstream geneLOC100040883, 4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292L06.T7 (MSMg01no292_l06.b1)MSMg01-292L06.TJ (MSMg01no292_l06.g1)
ACCAG421352AG421353
length728765
length of high quality
(start - end)
315 (23 - 337)285 (73 - 357)
definitionCHROMAT_FILE: MSMg01no292_l06.b1 PHD_FILE: MSMg01no292_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:50 2005CHROMAT_FILE: MSMg01no292_l06.g1 PHD_FILE: MSMg01no292_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTTTTTTGTTGAGTTTT
TAGGTAGCCATAAACAGCTGCTTTTTTGGAGTTCTCTCTATCCATATTTA
CATGTTCATTTTTTTTCTATTTTGGTTATGAGACTATTCTTGCCATTTTT
TTAAACAAATCCTACTTTTATTTAAGAATATACTTCCCAACCTACTAATC
CTGAAAAGAAAGTAGCTTAACTTTGTTAAGTATTTACAAATCACTGAAGT
GTCCGGGAGATTGTTGAATGCTGTGAGCTAAATCTCTCTTAAGTCTTTCC
TACTCTGGTAGATGCAACAGCCATCCCCTAAGTATTTTTTGTATAATGCC
CCCCCCCTCTAAACAAGAAACGTTCTAGAATGTCATGATCCCCCCAAGCT
GAAGTACCACTATATCTCTTTGAAGTTGTCAAATGTCATTTTAATGAATT
TCTTTCAGAGTTTTGTCAAGAATTCATACCAAAATGCGTATATCTTTAGC
TTCTAGCATTTCTGTTCTCATTGGAAAGACCAATATTAACTTCTAAGTAT
GGTCAATTTCAGAACATGATCAAGAAAGAAAAATATATCGCATACTTATT
GGAAAAATGAAGTAAGATGGGAACTGAGATACTTAGTCCAATGCAGGTTA
CGAGGTTTACACTTAATTACATTACCCCGCCAGTGTTATACCTTGATTTG
CCTTAACCCCGACCGTACTCCTTTCTGC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTGCCCCATTTTTTA
ATGGGGTTATTTGATTTTCTGGAGTCCAGCTTCTTGAGTTCTATGTATAT
ATTGGATATTAGTTCCCTATCAGATTTAGGATTGGTAAAAATCCTTTCCC
AACCTGTTGGTGGCCTTTTTGACTTATTGACAGTGTCTTTTGCCTTACAG
AAGTTTTGCAATTTTATGAGGTCCTATTTGTAATTCTCAATCTTACAGCA
CAAGCCATTGGTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCTTATCTTT
GAGGCTTTTCTTTTACTTTCCCTCCCACCAGCTTTAGTGTCTCTGGTTTT
ATGTGGAGCCCCCCCCCCTCTCTTAAACAAGAACTTAGTACCAGGGGATA
AGAATGGATCAATTTGCATTCATCTACTTGATAACTGCCAGTTAAGCCAG
CACCATTTGTTGAAAATGCTGTCTTTTTCCACTGCATGGCTTTAGTTCCT
TTTGTATATATCAAGTGACCTATGTGTGTGCTTTCTTTTTTTTTAACCCA
TCCCTCATCGCTTATGTTCTTTATGATTTTGTCGACTTATCCCCCGCATT
CTGTTGCCCCTTCGCTACATCCTTCCCGTCACTTTTTTAATTTCCCTACT
CGCCTCTTGTCTTCTCCTCTTATTCTCTTCTCCTTTTTTCTTCTCCCTCT
GTCTTTCTTCTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_l06.b1 MSMg01no292_l06.b1 CHROMAT_FILE:
MSMg01no292_l06.b1 PHD_FILE: MSMg01no292_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:50 2005
         (315 letters)



>mm_chr4_52457783_52458496
          Length = 714

 Score =  547 bits (283), Expect = e-160
 Identities = 301/307 (98%), Gaps = 1/307 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacttttttgttgagtttttaggtagccataaacagctgcttttttggagttctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 205 gaattcacttttttgttgagtttttaggtagccataaacagctgcttttttggggttctc 264

                                                                       
Query: 65  tctatccatatttacatgttcattttttttctattttggttatgagactattcttgccat 124
           |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctaaccatattta-atgttcattttttttctattttggttatgagactattcttgccat 323

                                                                       
Query: 125 ttttttaaacaaatcctacttttatttaagaatatacttcccaacctactaatcctgaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttttaaacaaatcctacttttatttaagaatatacttcccaacctactaatcctgaaa 383

                                                                       
Query: 185 agaaagtagcttaactttgttaagtatttacaaatcactgaagtgtccgggagattgttg 244
           ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 384 agaaagtagcttaactttgttaagtatttaccaatcactgaagtgtcctggagattgttg 443

                                                                       
Query: 245 aatgctgtgagctaaatctctcttaagtctttcctactctggtagatgcaacagccatcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 444 aatgctgtgagctaaatctctcttaagtctttcctactctggtagatgcgacagccatcc 503

                  
Query: 305 cctaagt 311
           |||||||
Sbjct: 504 cctaagt 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 714
Length adjustment: 9
Effective length of query: 306
Effective length of database: 705
Effective search space:   215730
Effective search space used:   215730
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)