BAC Information

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BAC

Clone NameMSMg01-292M24
Chromosome4 (Build37)
Map Location 114,073,980 - 114,074,223
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC242627, LOC100040625, A630098G03Rik
Downstream geneLOC666048, Foxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292M24.T7 (MSMg01no292_m24.b1)MSMg01-292M24.TJ (MSMg01no292_m24.g1)
ACCAG421431AG421432
length742823
length of high quality
(start - end)		320 (47 - 366)245 (77 - 321)
definitionCHROMAT_FILE: MSMg01no292_m24.b1 PHD_FILE: MSMg01no292_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:59 2005CHROMAT_FILE: MSMg01no292_m24.g1 PHD_FILE: MSMg01no292_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTTCTTCATGTCCTCTACCATCATCATGAGATATGCTTTTAAAT
CCAGGTCTATCTTTTCAGGTGTGTTAGGGTGTCCTGGACTGGGCGAAGTG
GGCGTTCTGGGTTCTGATGATGGTGAGTTGTCCTGGTTTCTGTTAGTAGG
ATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGCTA
TAGTTGTCTTTGTTAAGAGATTGTTCCTCTGTTGATTTTGTTGCCCTCAA
TCAGCAGGCATGGGAGACAAGCTCTCTCCTCTGAGTTTCAGTGGTCAGAG
CAGTCTCTGCAGGCAATTTCTCTTCTTCCCCCCCCCGCTACAGTTATCTG
GTGTTTGGACCTCCTCCTCCCCCAACGTGAAAAAAAAAAACAGGATCTTT
CCCGGAAGCTGTGTTCCTTTGGCCAGCAACGTGGTCTTTTGTCTGTAATC
GAATATGTCGCCTTCCTCAAATCTCTGTGGTTCTCGCCAGTCATATTTTC
CGCTGTCTTTTTTTTCCATTGCTTTGCTTTTAACACCTGTTCTTTTCCTT
TTATATTTTCTTTCCCCCATTTTCTTCTCTTCATCATTCCATTCTCTTTT
TCCCCCCTTTTTCCTTCTCTTGTTCCCCCCCTATCCCTTCTCCCCTTATC
TTTCCCCTCTTTATCTTTCCTACATCCTTTGCCTTTTTTCTT

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACACACCCTGTAACCTCTGCACCA
GGAAACTGAAGCATTAGGGTGGCGAGTTTGAGGACAGCCTGGGCCACCTA
GAGTCCCTCACTTCAGTCCCTAAATCACAGTCAACAAAAAAATAAACAGG
AGCTGAAAGATAAGGCATCAAGGGGCATGGGAATTGCATGTGCATAGGAG
TAGGAGTGTGTTTGAGTTTGGTGCATTGGGGGAACTGGGACAGATGATGA
AGGAGGATTAGAATTATACATGGTCATATTTTGTGGTTGCCAGCAGGAAG
TTGCAAAGGGGCTTATTTTTTTTTTTTCCCCCCCCCCCCCAAGGTTGTTC
TACTCTGCAGAAATTGTGTTGCCCCTTTATAATAAAAAAAAAAAAATCCC
GGCGGGGGGGAGATTTTTTCTTCGTTTTTTCTTTTTTTTTTTCCTTCTTT
TAACTGTGTTTTCTCACTTTTTCTTCTTGAAATAGTTGATCAAAATAATT
TGCTTTTCTTCTATACTTAATATTGCCCCTCACTTCCTTTTTATTCTGTT
CCTTTATACACACACCCCAAGCGGTTGTTTTTTTGTCTCTCCCCCCTTCC
TAATCCATTTAGTTCTCTCTTTTTTCACTGATAGCGAACCTCTCTTTTTC
TCTCTCTTACTTTATTTTCCTTCTGCTCTTTTATTTTGTTTCTTTTTGTT
TTATTCCCCTTCTCGCAACTCGCTTTCTATCAACTACTTCCGTTTCTTGC
TATCTTTCCCCGCACTATATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_m24.g1 MSMg01no292_m24.g1 CHROMAT_FILE:
MSMg01no292_m24.g1 PHD_FILE: MSMg01no292_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:59 2005
         (245 letters)



>mm_chr4_114073699_114074342
          Length = 644

 Score =  406 bits (210), Expect = e-118
 Identities = 237/248 (95%), Gaps = 7/248 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacaccctgtaacctctgcaccaggaaactgaagcattagggtggcgagtttgaggaca 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 525 acacaccctgtaacctctgcaccaggaaactgaagcattagggtggagagtttgaggaca 466

                                                                       
Query: 61  gcctgggccacctagagtccctcacttcagtccctaaatcacagtcaacaaaaaaataaa 120
           |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 465 gcctgggccatctagagtccctcactccagtccctaaatcacagtcaacaaaaaaataaa 406

                                                                       
Query: 121 caggagct---gaaagataaggcatcaaggggcatgggaattgcatgtgcataggagtag 177
            |  || |   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 -a--ag-tcaagaaagataaggcatcaaggggcatgggaattgcatgtgcataggagtag 350

                                                                       
Query: 178 gagtgtgtttgagtttggtgcattgggggaactgggacagatgatgaaggaggattagaa 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gagtgtgtttgagtttggtgcattgggggaactgggacagatgatgaaggaggattagaa 290

                   
Query: 238 ttatacat 245
           ||| ||||
Sbjct: 289 ttagacat 282


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 644
Length adjustment: 9
Effective length of query: 236
Effective length of database: 635
Effective search space:   149860
Effective search space used:   149860
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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