Query= MSMg01no293_b17.b1 MSMg01no293_b17.b1 CHROMAT_FILE:
MSMg01no293_b17.b1 PHD_FILE: MSMg01no293_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:24 2005
(468 letters)
>mm_chr4_31780254_31781121
Length = 868
Score = 760 bits (393), Expect = 0.0
Identities = 440/461 (95%), Gaps = 11/461 (2%)
Strand = Plus / Minus
Query: 5 gaattcttaaattctactttcaccctgtttttaaattattaaagggagtagaaaagctat 64
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 455 gaattcttaaattctactttcactctgtttttaaattattaaagggagtagaagagctat 396
Query: 65 aaaagtaacagcagacttctaactcagtgttaagaagaatgtttgagcaagcccttggag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aaaagtaacagcagacttctaactcagtgttaagaagaatgtttgagcaagcccttggag 336
Query: 125 atagaggctggtggtaggaggagaggaggctgtatttcagactttgacaaagcaaaggga 184
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 335 atagaggatggtggtaggaggagaggaggctgtatttcagactttgacaaagcgaaggga 276
Query: 185 aatttcttgtcctttcttcattcctaaagaatatgacatagtattttatttcatggcatc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aatttcttgtcctttcttcattcctaaagaatatgacatagtattttatttcatggcatc 216
Query: 245 cttgatcctcttctctctctctcaccctctctct--tcttctccctctctctttctttct 302
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 215 cttgatcctcttctctctctctctccctctctctcttcttctccctctctctttctttct 156
Query: 303 ctctctctccctctcctcctgcctctgcttctccctctccctctctctgcccctcagtgt 362
||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 155 ctctctc--cctctcctcctgcctctgcttc-------ccctctctctgcccctcagtgt 105
Query: 363 atatgccggttgttgtatgcacatgtgtgcatgagagagggagagagggagagagagaga 422
||||| | ||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 104 atatgtctgttgttgtatgcacatgtgtgcatgagagagagagagagagagagagagaga 45
Query: 423 gagagagagagagagagagagagagagagagagagagagag 463
|||||||||||||| ||||||||||||||||||||||||||
Sbjct: 44 gagagagagagagaaagagagagagagagagagagagagag 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 144
Number of extensions: 38
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no293_b17.g1 MSMg01no293_b17.g1 CHROMAT_FILE:
MSMg01no293_b17.g1 PHD_FILE: MSMg01no293_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:24 2005
(567 letters)
>mm_chr4_31760831_31761797
Length = 967
Score = 1056 bits (546), Expect = 0.0
Identities = 561/566 (99%)
Strand = Plus / Plus
Query: 2 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacgtacatgcacacata 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacgtacatgcacacata 261
Query: 62 ctgcattatctggctgatgttattctcaaaggaagctaaacagttttcttaggaacatgc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctgcattatctggctgatgttattctcaaaggaagctaaacagttttcttaggaacatgc 321
Query: 122 tgtgtcagtccccagtgtatgttccagccttgattgatacactccacttgtgtgaacgaa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgtgtcagtccccagtgtatgttccagccttgattgatacactccacttgtgtgaacgaa 381
Query: 182 gttagtccccctcagtaccctgtcttagttttcactgtactcttttgtaagggcaaggta 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gttagtccccctcagtaccctgtcttagttttcactgtactcttttgtaagggcaaggta 441
Query: 242 atggctaccctaaacagcagagccagtgaggggtcaggccaggctatacctatcatctga 301
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 442 atggctaccctaaacagcagagccagtgaggggtcaggccaggctatacctaccatctga 501
Query: 302 ctgccaccatgaacaatttcctgtgccattcatgagggtgcaacaccccttacagcttca 361
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 502 ctgccaggatgaacaatttcctgtgccattcatgagggtgcaacagcccttacagcttca 561
Query: 362 ttggtccctaaaggacatgacaacttaaaactgtcacctaggggattaaattccaatttc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttggtccctaaaggacatgacaacttaaaactgtcacctaggggattaaattccaatttc 621
Query: 422 tacatttgggaggagtgcatgtattgaaatcaaacagactgccaaagctgcgagggtcta 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tacatttgggaggagtgcatgtattgaaatcaaacagactgccaaagctgcgagggtcta 681
Query: 482 gctgtgcatggcctgaatgcaagacgtatattttattctctgaatatagggcactgtgga 541
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 682 gctgtgcatggcctgaatgcaagacatatattttattctctgaatatagggcactgtgga 741
Query: 542 agatattttagcataagcatagtaga 567
||||||||||||||||||||||||||
Sbjct: 742 agatattttagcataagcatagtaga 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
