BAC Information

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BAC

Clone NameMSMg01-293D06
Chromosome4 (Build37)
Map Location 125,251,256 - 125,411,002
singlet/doubletdoublet
Overlap geneGrik3
Upstream genePou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a, LOC100039298, Ftl2
Downstream geneCsf3r, Mrps15, 1810007P19Rik, LOC100039645, Lsm10, Stk40, 2610027C15Rik, 1700029G01Rik, Thrap3, Mtap7d1, Trappc3, Col8a2, EG667193, Adprhl2, Tekt2, Eif2c3, Eif2c1, LOC100039351, Eif2c4, Clspn, LOC665197, 5730409E04Rik, LOC620877, Psmb2, Tcfap2e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293D06.T7 (MSMg01no293_d06.b1)MSMg01-293D06.TJ (MSMg01no293_d06.g1)
ACCAG421715AG421716
length767771
length of high quality
(start - end)
325 (46 - 370)293 (76 - 368)
definitionCHROMAT_FILE: MSMg01no293_d06.b1 PHD_FILE: MSMg01no293_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:32 2005CHROMAT_FILE: MSMg01no293_d06.g1 PHD_FILE: MSMg01no293_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,251,256 - 125,251,577)(125,410,714 - 125,411,002)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACGGGAGGTTTGGAGAGAGAGAATTCACACTTCAGTGGAAATGTG
TTTCAAACAATTAGCAGGTCTTTACCGCAGGAGTCTTTGAAGTTGGAGCC
CAGACCCATCTCTCTGAAGGGTTTCCCTAGAACTGACAGGCTGGCAGACG
CTGACACAGCTCGGCCTTTGCTGGAGTGCCAAGGGCTCCCATCTCTGGGC
TGGCACCTTAGGTTTCAAATGAGTCCCTCCAGCAGCCCCAGTGTGGTCCT
CCATTGCTGTGTGATACAGAGGGATCTGCATCGCTGAGACCCGAGGTCCT
GTAGGGGAGCCAGCCTTCTGTTTTGCCTACCCCCCGCACCACAGGATTTC
CTGTTTTCCAAACCTAACCCCGCCCTGGGCAGCAGAAGCCCTTGTCTGTG
AGCTGAGAACTCCAGCATCCTTGAACCTTGCCTGGCTGTTTGTGCTATTA
ACAGCTGAATAACTTTGATGGACTCTTAGAAAGATGCAAACAGATGGGAT
CAGAGAACACTGGGTTAACGAGTCTTAGGGCTCTGAGCCAAACCAGGCTT
TCCGTGGAAGGGCTCATCTTGCAGACTAAGACTGGATCCTAGTTCTCTCC
TCTGATTGAGCTGCATGGTCTTTGGGAAGTCACTTTGCGTGCCTCAGTTT
CTCTGCCCGTGAAATGGGCAGAGTAGTCTATTTTTTTTCAGGCCCATTGT
GGATTCTGTGACAGGAC
CGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTTTGTGCCCAAGGCCAAGCAATG
GCCTGGCCCAGGGAGGGAGTGAAAGTCGGCATGGTGTTGTTGCCTATTGC
AGAGTTCTGTTCTCCAGGGCACAGACCAGGATGGTGCTTGCCCAGGGCCT
GCTGTCGGGGACAGTCACGTGACTCTTCTGTCTCGTCCCAAGAATGGTCT
GCAATAGCCATTCTTTTGGTTTTGAATGAGTGAGTTTATTGAGTACACAG
CAAACAAATGTACAAGAATAAGTGGTGAATGGTAGACAGAAGCAGCAGGC
AGGCAGGCAGGCAGACAGACTTTTTGACACACCCTCACACATCATCTGTT
CAGGTGCTCAGAAATCCAGACCACACCGAGGTGGACCAACTGAGAGAGCA
AATGAAAGCATATGGCATCAGATCAGGAGCAAACTCCTGGCAGACACTGA
CTGACTGTCCTTAGACAAGGGGTCTTAGAAAACACTGGAAATAAACATGT
TCATGTTGGAAGTGTGTGGTGTCTCCTGAGCCAGCTTCCTGTTGCGCTCA
GACAGCACGTGGTAATTTTCCAATGTGAGAACTGGAGCAGGCAAGGGTAC
ATGAAACTGTGTGCGTGTGTGTGTGTGTGTTTCCTTGTTCTACCTTTATT
TCTTCTCTCCATCCTTATCTTTCACCTCCTTCTCTTTCCGTCTTTTTTTC
TTCTTCTTTTTTTTTCCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_d06.b1 MSMg01no293_d06.b1 CHROMAT_FILE:
MSMg01no293_d06.b1 PHD_FILE: MSMg01no293_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:32 2005
         (325 letters)



>mm_chr4_125251053_125251777
          Length = 725

 Score =  607 bits (314), Expect = e-178
 Identities = 320/322 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacgggaggtttggagagagagaattcacacttcagtggaaatgtgtttcaaac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacgggaggtttggagagagagaattcacacttcagtggaaatgtgtttcaaac 263

                                                                       
Query: 64  aattagcaggtctttaccgcaggagtctttgaagttggagcccagacccatctctctgaa 123
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 264 aattagcaggtctttaccgcaggagtctttgaagtcggagcccagacccatctctctgaa 323

                                                                       
Query: 124 gggtttccctagaactgacaggctggcagacgctgacacagctcggcctttgctggagtg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gggtttccctagaactgacaggctggcagacgctgacacagctcggcctttgctggagtg 383

                                                                       
Query: 184 ccaagggctcccatctctgggctggcaccttaggtttcaaatgagtccctccagcagccc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 384 ccaagggctcccatctctgggctggcaccttaggtttcaaatgagtccctccagcggccc 443

                                                                       
Query: 244 cagtgtggtcctccattgctgtgtgatacagagggatctgcatcgctgagacccgaggtc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cagtgtggtcctccattgctgtgtgatacagagggatctgcatcgctgagacccgaggtc 503

                                 
Query: 304 ctgtaggggagccagccttctg 325
           ||||||||||||||||||||||
Sbjct: 504 ctgtaggggagccagccttctg 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no293_d06.g1 MSMg01no293_d06.g1 CHROMAT_FILE:
MSMg01no293_d06.g1 PHD_FILE: MSMg01no293_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:32 2005
         (293 letters)



>mm_chr4_125410534_125411226
          Length = 693

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtttgtgcccaaggccaagcaatggcctggcccagggagggagtgaaagtcggcatggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 469 tgtttgtgcccaaggccaagcaatggcctggcccagggagggagtgaaagttggcatggt 410

                                                                       
Query: 61  gttgttgcctattgcagagttctgttctccagggcacagaccaggatggtgcttgcccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gttgttgcctattgcagagttctgttctccagggcacagaccaggatggtgcttgcccag 350

                                                                       
Query: 121 ggcctgctgtcggggacagtcacgtgactcttctgtctcgtcccaagaatggtctgcaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ggcctgctgtcggggacagtcacgtgactcttctgtctcgtcccaagaatggtctgcaat 290

                                                                       
Query: 181 agccattcttttggttttgaatgagtgagtttattgagtacacagcaaacaaatgtacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 agccattcttttggttttgaatgagtgagtttattgagtacacagcaaacaaatgtacaa 230

                                                            
Query: 241 gaataagtggtgaatggtagacagaagcagcaggcaggcaggcaggcag 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 gaataagtggtgaatggtagacagaagcagcaggcaggcaggcaggcag 181


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)