Query= MSMg01no293_l19.b1 MSMg01no293_l19.b1 CHROMAT_FILE:
MSMg01no293_l19.b1 PHD_FILE: MSMg01no293_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:15 2005
(704 letters)
>mm_chr4_47012475_47013578
Length = 1104
Score = 1199 bits (620), Expect = 0.0
Identities = 680/700 (97%), Gaps = 1/700 (0%)
Strand = Plus / Minus
Query: 4 ggaattctatatcttatacagcatgtgaaaagatggtagggcatcggcgtggtccgaagg 63
|||||||||||||| | | |||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 974 ggaattctatatctcagaaagcacgtgaaaagacggtagggcatcggcgtggtccgaagg 915
Query: 64 actgattcacactgaaaccaactcccgtcatggtggcgttagtatgtgggatcttcaaac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 actgattcacactgaaaccaactcccgtcatggtggcgttagtatgtgggatcttcaaac 855
Query: 124 agcgatgaagtttataaaagagccccttcagaaaaggcaccagctatgcagactggctct 183
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 854 agtaatgaagtttataaaagagccccttcagaaaaggcaccagctatgcagactggcact 795
Query: 184 ttctagtcatcagatatgctggtgccttgatcttggaattcctcatctccaaaactatga 243
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 794 ttctagtcatcagatatgctggagccttgatcttggaattcctcatctccaaaactatga 735
Query: 244 gttttgtttccaaactgcccactctgatgtattttattacaataacctaaatagaccaag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gttttgtttccaaactgcccactctgatgtattttattacaataacctaaatagaccaag 675
Query: 304 accagtccaggctgaacttcactaaaattcccatgaaattggaatggacagcatcttaag 363
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 674 accagtccaggctgaacttcactaaaattcccatgaaattggaatggccagcatcttaag 615
Query: 364 aaatgggcgaaagtaactaaaatatcctaatgttggatgccatcttgcttgtgcttttgg 423
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 614 aaatgggcaaaagtaactaaaatatcctaatgttagatgccatcttgcttgtgcttttgg 555
Query: 424 cctgtggtacagcccagaggtagggcaggagcaatcactagaaaagctgacgcctctaat 483
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 554 cctgtggtacagcccagaggtagggcaggagcaatcactagaaaagctgacacctctaat 495
Query: 484 ctcagcccttgggaggcagaggaagggggattgccgggttcaaggacagcctggtgtaca 543
| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 494 cccagcccttgggaggaagaggaagggggattgcggggttcaaggacagcctggtgtaca 435
Query: 544 gagttcctggacagccaaggttgcacagaaaaaatctctgtctcggaaaataaaaaaacc 603
||| ||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 434 gagctcctggatagccaaggttgcacagaaaaa-tctctgtcttggaaaataaaaaaacc 376
Query: 604 aaaaagtaaataagtaaagacttgctgtttttcaaagatggtggcttggaacatgaattg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aaaaagtaaataagtaaagacttgctgtttttcaaagatggtggcttggaacatgaattg 316
Query: 664 ggtcacagaatgtagctgtaccctaccacagaatgcactc 703
||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ggtcacagaatgtagctgtaccctaccacagaatgcactc 276
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space: 759236
Effective search space used: 759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no293_l19.g1 MSMg01no293_l19.g1 CHROMAT_FILE:
MSMg01no293_l19.g1 PHD_FILE: MSMg01no293_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:15 2005
(557 letters)
>mm_chr4_46974700_46975654
Length = 955
Score = 1019 bits (527), Expect = 0.0
Identities = 549/557 (98%), Gaps = 3/557 (0%)
Strand = Plus / Plus
Query: 1 tcatgtctctgaccccactatctccatagtgacaccagagttacagacacatgctttttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatgtctctgaccccactatctccatagtgacaccagagttacagacacatgctttttg 260
Query: 61 gaggctggctttagtaaatgctggggggggtctgaattcatgttcttgtttattttacct 120
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 gaggctggctttagtaaatgctgggggg--tctgaattcatgttcttgtttattttacct 318
Query: 121 aatgggccagctccccagcctggagatgaagattcaaagcatcagtgagtgattaattaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aatgggccagctccccagcctggagatgaagattcaaagcatcagtgagtgattaattaa 378
Query: 181 aagccccatatcttagaaggtgggatgtgaattcttcttcgtcctaagatagcagacaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aagccccatatcttagaaggtgggatgtgaattcttcttcgtcctaagatagcagacaga 438
Query: 241 gggagaaagttcttactatttgtaagcactttcctgtttatctccgctacaattaatgca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gggagaaagttcttactatttgtaagcactttcctgtttatctccgctacaattaatgca 498
Query: 301 tatgcggaaagattttacatgttaaaaaatagaaatgcagctggaaagattgctctgtca 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tatgtggaaagattttacatgttaaaaaatagaaatgcagctggaaagattgctctgtca 558
Query: 361 gtgaagtgtttgctttcaggtgagatagtgcacacatacaatcccttcactggggaggca 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 559 gtgaagtgtttgctttcaggtgagatagtgcacacatacaatccctccactggggaggca 618
Query: 421 gagagaggcagggctctagggctctgtggccaaccagccttggcaggtttcaggacagtg 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 619 gagagaggcagggctctagggctctgtggccaaccagccttggcagatttcaggacagtg 678
Query: 481 agagaccctgactcaaaagagaaaggaaggacagaaggaaggaaggaaggaaggaaggaa 540
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 679 agagaccctgactcaaaagagaaaggaaggaaagaaggaaggaaggaaggaaggaaggag 738
Query: 541 ggagggaagggagggag 557
||||||| |||||||||
Sbjct: 739 ggaggga-gggagggag 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 955
Length adjustment: 10
Effective length of query: 547
Effective length of database: 945
Effective search space: 516915
Effective search space used: 516915
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
