Query= MSMg01no293_n16.b1 MSMg01no293_n16.b1 CHROMAT_FILE:
MSMg01no293_n16.b1 PHD_FILE: MSMg01no293_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:23 2005
(375 letters)
>mm_chr4_134215874_134216648
Length = 775
Score = 605 bits (313), Expect = e-177
Identities = 356/375 (94%), Gaps = 10/375 (2%)
Strand = Plus / Plus
Query: 5 gaattcctcgggccacatacttaggatgcttccagtgacagtgtgagcagagagcgagga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcgggccacatacttaggatgcttccagtgacagtgtgagcagagagcgagga 264
Query: 65 gtgcttga----attttatccctgcagcctccctctgaaaagagagcctaatcacgcagg 120
|||||||| ||| ||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 265 gtgcttgaaaggatt-----cctgcagccgccctctgaaaagagagcctaatcacgcggg 319
Query: 121 agccggcagagcatcaggccatttgatcgcaaacccttgaaaaagacaccaaagaacaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agccggcagagcatcaggccatttgatcgcaaacccttgaaaaagacaccaaagaacaat 379
Query: 181 taactagaaaaaccaaaaggcctcctcgtgatgaactagtgggaccggccaagagagaga 240
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 380 tagctagaaaaaccaaaaggcctcctcatgatgaactagtgggaccggccaagagagaga 439
Query: 241 cagagagaaaactcagatcatttgaactacttcagtgatcgcaatcaaagcacacaggag 300
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 440 cagagagaaaactcagatcgtttgaactacttcagtgatcacaatcaaagcacacaggag 499
Query: 301 ccctggacttgctcggtttccagagtctttctcctgacgcgctgcatccc-ccccctgaa 359
|||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||
Sbjct: 500 ccctggacttgctcggtttccagaacctttctcctgacgcgctgcaccccaccccctgaa 559
Query: 360 atccgaggcccccat 374
|||||||||||||||
Sbjct: 560 atccgaggcccccat 574
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space: 280356
Effective search space used: 280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no293_n16.g1 MSMg01no293_n16.g1 CHROMAT_FILE:
MSMg01no293_n16.g1 PHD_FILE: MSMg01no293_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:23 2005
(289 letters)
>mm_chr4_134371692_134372380
Length = 689
Score = 513 bits (265), Expect = e-150
Identities = 277/281 (98%)
Strand = Plus / Minus
Query: 9 ctgagactttctcttagcgtactcaaccaatgtcattaggtaccgatcgtgaagcccagg 68
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 426 ctgagactttctcttagcgtactcaactaatgtcattaggtagtgatcgtgaagcccagg 367
Query: 69 gtttctcaggcagggacgctgatcttaactatcacactttggaaagcagtaattaagagt 128
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 366 gtttctcaggcagggacgctgatcttaactatcacgctttggaaagcagtaattaagagt 307
Query: 129 tggtggagctaatgacagtagttaggaaaagactgaagcatttttgtcctatttttttat 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tggtggagctaatgacagtagttaggaaaagactgaagcatttttgtcctatttttttat 247
Query: 189 gagaataaattgttttgtattttcaaaacaaaccatttctctggaggtagaagtgggtgg 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gagaataaattgttttgtattttcaaaacaaaccatttctctggaggtagaagtgggtgg 187
Query: 249 atctctgaggccaacctgctctacagtgcttcatcgtaagc 289
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 atctctgaggccaacctgctctacagtgcttcatcgtaagc 146
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
