BAC Information

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BAC

Clone NameMSMg01-294A19
Chromosome4 (Build37)
Map Location 48,105,376 - 48,105,650
singlet/doubletsinglet
Overlap genenone
Upstream geneGalnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b, LOC100040788, Nr4a3
Downstream geneStx17, Txndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik, E130309F12Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294A19.T7 (MSMg01no294_a19.b1)MSMg01-294A19.TJ (MSMg01no294_a19.g1)
ACCAG422326AG422327
length723729
length of high quality
(start - end)
219 (431 - 649)275 (436 - 710)
definitionCHROMAT_FILE: MSMg01no294_a19.b1 PHD_FILE: MSMg01no294_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:38 2005CHROMAT_FILE: MSMg01no294_a19.g1 PHD_FILE: MSMg01no294_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAAATCCGCGGAATTCC
TGATCTTTTCAAAAAATTTATCATGAATGGGTGTTGGATCTTGTCAAATG
CTTTTTCTGCTTTTAACCAGATGATCATGTGGTTTTTGTCTTTGAGTTTG
TTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTG
CATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATGT
GTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCAATA
TTCATAAGAGAAATTTGTCTGAAGTTCTCTATCTTTGTTGGATCTTTCTA
TGGTTTTTTTATCTCAGCAATACCTGGCTTCATAAAATGAGTTGGGTAGA
GTACCTTCTACTTCTATCTTGTGAAAAAGTTTGTGCAGAACTGGAATTAG
ATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCGTCTGGTCCTG
GGCTTTTTTTGGCTGGGAGACTATTTATAACTGCTTCTATTTCTTTAGGG
GATATGGGACTGTTTAGAAGGTCAACTTGATCCTGATTCAACTTTGGTAC
CTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTCCAGTTTTG
TTGAGTATAGCCTTTTGTAGAAGGATCTTGATGGTGTTTTGGATTTCTTC
AGGATCTGTTGTTATGTCTCCCC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGACTAGACATTCACTGATGAGGGTTGGAA
GTGGAAAAATGTGTTCATTCCCCAAGGAAGAGAGCGTGCCATGATTTTTG
AGTTGGTGTCCAGAGCCAAAGTGTCTAGTTTCATCTTTTTCTGAACTTCG
ATGCAAAAGAGTGAGTGAGAGAGCGAGAGAAAATCAACCCAACCCCAAGG
AAGGCTTGTTTTCGCCTTCCCTCCAGAAAGCAGCTGTCAGTTTAACTTAT
TGCAAAATACCTTCAGTGATGAGCATGGCTGGAAATGCGTTTTATCTGTA
ATTAGAGATTTTTCANTACCCCCTCCTCCCCTGCAGACACACATTGAATT
AACCCTAATCGAGGCTACCAAATAAAAAAAACAGCCTATTTTTCGCCTCG
AAATTTTTAGAAAATTGTGACAGTTGACACACGGGGACAATGCTGACGAG
ATTTCTTTCTGTCAAATGGCAGACAGTAATTGTAATTGCCTTTAAAAAAT
GTTTTAAGCGGTTTCGTTAGTAAATCAGAAGTTGCCACAAATCAGGCTGA
TAGTTTTGAAACATGGGGGCCTGTTGACTGTGCATTCCAATATGAGTTTA
ATGAATTGATTTTTCTAAGGAATGTAACTTTGCATCTGTTTTCAGGTGTA
ATTAATTCGCTCTGATTAATGTGATTAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_a19.g1 MSMg01no294_a19.g1 CHROMAT_FILE:
MSMg01no294_a19.g1 PHD_FILE: MSMg01no294_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:38 2005
         (275 letters)



>mm_chr4_48105176_48105850
          Length = 675

 Score =  516 bits (267), Expect = e-151
 Identities = 273/275 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatttttcgcctcgaaatttttagaaaattgtgacagttgacacacggggacaatgctg 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatttttcgcctcaaaatttttagaaaattgtgacagttgacacacggggacaatgctg 260

                                                                       
Query: 61  acgagatttctttctgtcaaatggcagacagtaattgtaattgcctttaaaaaatgtttt 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaagatttctttctgtcaaatggcagacagtaattgtaattgcctttaaaaaatgtttt 320

                                                                       
Query: 121 aagcggtttcgttagtaaatcagaagttgccacaaatcaggctgatagttttgaaacatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcggtttcgttagtaaatcagaagttgccacaaatcaggctgatagttttgaaacatg 380

                                                                       
Query: 181 ggggcctgttgactgtgcattccaatatgagtttaatgaattgatttttctaaggaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggggcctgttgactgtgcattccaatatgagtttaatgaattgatttttctaaggaatgt 440

                                              
Query: 241 aactttgcatctgttttcaggtgtaattaattcgc 275
           |||||||||||||||||||||||||||||||||||
Sbjct: 441 aactttgcatctgttttcaggtgtaattaattcgc 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)