Query= MSMg01no294_l18.b1 MSMg01no294_l18.b1 CHROMAT_FILE:
MSMg01no294_l18.b1 PHD_FILE: MSMg01no294_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:28 2005
(290 letters)
>mm_chr4_129281435_129282124
Length = 690
Score = 511 bits (264), Expect = e-149
Identities = 282/288 (97%), Gaps = 1/288 (0%)
Strand = Plus / Plus
Query: 1 ccttgaactcctggctgtcttcctgtctcagcctcctaagtgctgttaatgcc-gtgtga 59
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 200 ccttgaactcctggctgtcttcctgtctcagcctcctaagtgctgggaatgcaagtgtga 259
Query: 60 gctaggaacttgtcaggatcttatttttattatctaagcaggaatgggaggtggctgggt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gctaggaacttgtcaggatcttatttttattatctaagcaggaatgggaggtggctgggt 319
Query: 120 agttaagagaacttcttcctcttgaggaccccagttcaattcccagcagcgcatgatgac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agttaagagaacttcttcctcttgaggaccccagttcaattcccagcagcgcatgatgac 379
Query: 180 acacactgttccagaaggttctgacctccataggtacaacacatgcatgaaagcaaaata 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acacactgttccagaaggttctgacctccataggtacaacacatgcatgaaagcaaaata 439
Query: 240 ctcatacacacttatatctttaaagagagaaaggaaggggtccctcca 287
||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 440 ctcatacacacctaaatctttaaagagagaaaggaaggggtccctcca 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no294_l18.g1 MSMg01no294_l18.g1 CHROMAT_FILE:
MSMg01no294_l18.g1 PHD_FILE: MSMg01no294_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:29 2005
(234 letters)
>mm_chr4_129452277_129452910
Length = 634
Score = 445 bits (230), Expect = e-129
Identities = 233/234 (99%)
Strand = Plus / Minus
Query: 1 ccatggaaaataatcatggagacaaacagccaccctttatgaattgccaggtgctttatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ccatggaaaataatcatggagacaaacagccaccctttatgaattgccaggtgctttatg 375
Query: 61 ctctacgacagatttttttttttttaaattgctatttaaaaccacaactgcctgcaggta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ctctacgacagatttttttttttttaaattgctatttaaaaccacaactgcctgcaggta 315
Query: 121 cttttgtctgtcctgggagtggcataatttttctctgggtagatggctctttgtttagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cttttgtctgtcctgggagtggcataatttttctctgggtagatggctctttgtttagga 255
Query: 181 aaacacttaataagttgcttgctcataaagaatggagctccctggagtgagcga 234
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 254 aaacacttaataagttgcttgcgcataaagaatggagctccctggagtgagcga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space: 140625
Effective search space used: 140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
