BAC Information

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BAC

Clone NameMSMg01-294L21
Chromosome4 (Build37)
Map Location 139,714,029 - 139,714,341
singlet/doubletsinglet
Overlap geneIgsf21
Upstream gene9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a
Downstream geneLOC100040728, Arhgef10l, Rcc2, Padi6, Padi4, Padi3, Padi1, Padi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294L21.T7 (MSMg01no294_l21.b1)MSMg01-294L21.TJ (MSMg01no294_l21.g1)
ACCAG422837AG422838
length738739
length of high quality
(start - end)
321 (48 - 368)---
definitionCHROMAT_FILE: MSMg01no294_l21.b1 PHD_FILE: MSMg01no294_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:29 2005CHROMAT_FILE: MSMg01no294_l21.g1 PHD_FILE: MSMg01no294_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTCCATTCTTTGAGTGGGATACTGAGGGTCTAAGAATCCTCAG
TGTGGACGGCGACCACCACCTGTTTTACCCAGATGAGGTAGCGAGGTAGT
GGCTACAGAGGGGGTAGACCTCCAGTGCGGAGGTCCCTGCTCACTCCTCA
GCCTACACTGAGAGGATAATCCCATTCACCCGCCCTCTCATGGCTTTTCC
CTTCTGCCAGCTCCTTGGCTCCCAGGGATCCCAGATCATGAGAACTCCGT
ACTGAAGAACTTTCCCCAACAGTAAGGTTCCTTCCATCTACAAGACCCAG
AGAGCCAGTGAGACTTTTCAGTGGGCCCANANACTNANNCCGCAAGCTTG
ACTACCCAAGTTCAATTCCCAGAACCCGCAACAAAAAGGGACAAGCTCCT
GAGGGCTGTTCTCTGACCTACATACACACACACATATACACACACACACA
CACACACACACACACACACATACACACACATACACACACTTACACACACT
CATACACACACACTCACACTCACACCATATGGCATACAGTTGTATACTCA
CTCATACACACGCTCACTAATACATACTTACACTCGCTTACTCTCACAAT
GATACGCTCATAGTGTCACACAGAGGCATGCACCCCGATTCCTATACACT
TTCTTATACTCCCAGACTCTTTCTGATACCTTTCACCT
GCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCCCGAGAAAAAAGAGNAAGNNNGNNNNNAAGGANNNG
GAAAGGGNGGGNGGNNNATTTTCCCCCAGAGGAAGGAGAAGNNNAGAANC
NAAGAAGNNAGGNAANCANAGNAGGGANNNGGAGGGGGGGGNCNCNGNAN
GGGGNCNCAGGGNNCCAGAGAAAGGGGGNAAGGGGGANAAAGAANCCAGG
GCCNGGGACTCCAGGCNCGGGCGGAGGNAGCCCNAGCNAAGAGGCAGAGA
CNGGAACCNNCCAGGACAGACATCTTTTTTTTTATAACACCTGACCCGAG
CCGGCAGNCACTTTTTTGTGGTTTCCCCCCCCCCCCCCCCNGNANNGNNN
NGGANNNNGNGNNANNGNGGAANNAAAAAAGGNAAGGGGAAAAGGGGGGN
AGGNNNGCGGNGNNNGNGNGNNNGGAGGNNAGAGGNNGANNGAAGGGGGN
AACGNCAGNGGANCNCCACCGCAAGCAAGAGGGAGGACCGCCCAGAGAAC
CGAAAGAACCAAAAAGCGGCCAAGAGGCCCCCGAGCCCGCAGGACCCCCA
NAACCCGCCCGGCCCCGGCCANACACACAAAACGGGGGGACAACAAAACG
CGCCCCAGGCAGAACCCAACCACACCAGGGACAGAGGGGACCAAGAACAG
GACAAAAACGGGCAACGGCGGCGGGAAACCAGGAGACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_l21.b1 MSMg01no294_l21.b1 CHROMAT_FILE:
MSMg01no294_l21.b1 PHD_FILE: MSMg01no294_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:29 2005
         (321 letters)



>mm_chr4_139713825_139714545
          Length = 721

 Score =  551 bits (285), Expect = e-161
 Identities = 306/313 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttccattctttgagtgggatactgagggtctaagaatcctcagtgtggacggcg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttccattctttgagtgggatactgagggtctaagaatcctcagtgtggacggcg 264

                                                                       
Query: 65  accaccacctgttttacccagatgaggtagcgaggtagtggctacagagggggtagacct 124
           |||||||||||   ||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accaccacctgcaatagggagatgaggtagcgaggtagtggctacagagggggtagacct 324

                                                                       
Query: 125 ccagtgcggaggtccctgctcactcctcagcctacactgagaggataatcccattcaccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccagtgcggaggtccctgctcactcctcagcctacactgagaggataatcccattcaccc 384

                                                                       
Query: 185 gccctctcatggcttttcccttctgccagctccttggctcccagggatcccagatcatga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gccctctcatggcttttcccttctgccagctccttggctcccagggatcccagatcatga 444

                                                                       
Query: 245 gaactccgtactgaagaactttccccaacagtaaggttccttccatctacaagacccaga 304
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 445 gaactccgtactgaagaactttccccaacagtaaggttccgtccatctacaagacccaga 504

                        
Query: 305 gagccagtgagac 317
           |||||||||||||
Sbjct: 505 gagccagtgagac 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)