Query= MSMg01no295_a09.b1 MSMg01no295_a09.b1 CHROMAT_FILE:
MSMg01no295_a09.b1 PHD_FILE: MSMg01no295_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:50 2005
(696 letters)
>mm_chr4_51827029_51828125
Length = 1097
Score = 1261 bits (652), Expect = 0.0
Identities = 681/691 (98%), Gaps = 1/691 (0%)
Strand = Plus / Plus
Query: 6 aattcagcctaaaagatcataacaaaggaagtggtgagactaaaataaagctgacgagac 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattcagcctaaaagatcataacaaaggaagtggtgagactaaaataaagctgacgagac 265
Query: 66 tgctcaatcttacatagtaacttcactcataaaaaaatattccctggcttcactttcaat 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgctcaatcttacatagtaacttcactcataaaaaaatattccctggcttcactttcaat 325
Query: 126 taaaatcgcagtttgactctctcatttcattcctgtagctgatacttccttagagacaga 185
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 326 taaaatcgcagtttgactctttcatttcattcctgtagctgatacttccttagagacaga 385
Query: 186 catctactagcccctaggcttatctgctattcctctcaataaattatctcctttcagatg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 catctactagcccctaggcttatctgctattcctctcaataaattatctcctttcagatg 445
Query: 246 acacttagcaaatataaatatcgtttgaaatgcattttcaaataccactgagctgtattc 305
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 446 acgcttagcaaatataaatatcgtttgaaatgcattttcaaatactactgagctgtattc 505
Query: 306 agttcatcaagaaatatttagaatatcaatgggaactaaattgccttcctctttggctgt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agttcatcaagaaatatttagaatatcaatgggaactaaattgccttcctctttggctgt 565
Query: 366 acctggcataactaaaataaacatcaatgaaataaaagttaaaaggccaggttgttagct 425
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 566 agttggcataactaaaataaacatcaatgaaataaaagttaaaaggcgaggttgttagct 625
Query: 426 tgacattcattaactgggtctgtacaaagttttctgatatttgtattgttttctgtgaaa 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tgacattcattaactgggtctgtacaaagttttctgatatttgtattgttttctgtgaaa 685
Query: 486 tgaagatttt-atgagttgatatccaaattatatcttcaagtttaaaatactattttgac 544
|||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 686 tgaagatttttattagttgatatccaaattacatcttcaagtttaaaatactattttgac 745
Query: 545 tgttgtgccaaaacatgaggtattaaaattttattatttaattatattattattttttat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tgttgtgccaaaacatgaggtattaaaattttattatttaattatattattattttttat 805
Query: 605 tatcaagaatcaaataaatagcatacctttgtgctctaagtctgtatatattgtatggtt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tatcaagaatcaaataaatagcatacctttgtgctctaagtctgtatatattgtatggtt 865
Query: 665 acaaaatacagacnaacatgcacacacacac 695
||||||||||||| |||||||||||||||||
Sbjct: 866 acaaaatacagacaaacatgcacacacacac 896
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1097
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1087
Effective search space: 745682
Effective search space used: 745682
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no295_a09.g1 MSMg01no295_a09.g1 CHROMAT_FILE:
MSMg01no295_a09.g1 PHD_FILE: MSMg01no295_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:50 2005
(663 letters)
>mm_chr4_52004465_52005527
Length = 1063
Score = 1266 bits (655), Expect = 0.0
Identities = 661/663 (99%)
Strand = Plus / Minus
Query: 1 cactgaacttcctgcagagccaagtcagatgccgacagaatggtggagatattcataaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 cactgaacttcctgcagagccaagtcagatgccgacagaatggtggagatattcataaca 885
Query: 61 tgtaccaggatgtaaacacccgtgggttggacattctgcatactgaccaacagagtcacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 tgtaccaggatgtaaacacccgtgggttggacattctgcatactgaccaacagagtcacc 825
Query: 121 ttatgaaatgggaaaaacatcaggataataaagacagagagatattttttcctactaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 ttatgaaatgggaaaaacatcaggataataaagacagagagatattttttcctactaatg 765
Query: 181 gccctctggcattctctactgctgatagacatttacatcataccagttggtaaaagatgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 gccctctggcattctctactgctgatagacatttacatcataccagttggtaaaagatgc 705
Query: 241 ttgcttgcaagatttggctagagggttaaaaaccatataaaaggttccttatgtttgttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ttgcttgcaagatttggctagagggttaaaaaccatataaaaggttccttatgtttgttg 645
Query: 301 ctagaagaaaacatattgataactagtataaagaccatgaatatctttcttctctaacag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ctagaagaaaacatattgataactagtataaagaccatgaatatctttcttctctaacag 585
Query: 361 actgggttggctccgtggagttaagggaagtaacagaagtctgatcactaagaagcagac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 actgggttggctccgtggagttaagggaagtaacagaagtctgatcactaagaagcagac 525
Query: 421 caaacagaattaatatcagagctcagaatatagatgccactctgtgcacagaaggattaa 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 524 caaacagaattaatatcagagctcagaatacagatgccactctgtgcacagaaggattaa 465
Query: 481 ctatcaacgcgagatttggctttttctccagtttccaggatgatcatatcttaagaacct 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ctgtcaacgcgagatttggctttttctccagtttccaggatgatcatatcttaagaacct 405
Query: 541 ggaatgatttgcttaatgaaactctttttatttattttgggttataagtcatgtgctcta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ggaatgatttgcttaatgaaactctttttatttattttgggttataagtcatgtgctcta 345
Query: 601 tgctaattatgtgacttatggtggtggctttatgttatctcatgtcaactttacatctgg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tgctaattatgtgacttatggtggtggctttatgttatctcatgtcaactttacatctgg 285
Query: 661 aaa 663
|||
Sbjct: 284 aaa 282
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
