Query= MSMg01no295_c05.b1 MSMg01no295_c05.b1 CHROMAT_FILE:
MSMg01no295_c05.b1 PHD_FILE: MSMg01no295_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:58 2005
(312 letters)
>mm_chr4_95599584_95600294
Length = 711
Score = 474 bits (245), Expect = e-138
Identities = 293/327 (89%), Gaps = 29/327 (8%)
Strand = Plus / Minus
Query: 5 gaattctaaaattctagaccaggctacaagggtttcccatttgatattgtacaggggata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gaattctaaaattctagaccaggctacaagggtttcccatttgatattgtacaggggata 275
Query: 65 gtatgcagtatccctgggcactggcacagtggcacatgctttttgtgttcaagccagaaa 124
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gtatacagtatccctgggcactggcacagtggcacatgctttttgtgttcaagccagaaa 215
Query: 125 gcaaaaaaaaaaaaaaaaagtattatggtcattcaggtgtgtgtgtgtgtgtgtgtgtgt 184
| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 g---------aaaaaaaaagtattatggtcattcaggtgtgtgtgtgtgtgtgtgtgtgt 164
Query: 185 gtgtgtg--------------------tgtgtatgtatgtgtgcgtgcatgcatgtgcac 224
||||||| |||||||||||||||||||||||||||||||||
Sbjct: 163 gtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtatgtatgtgtgcgtgcatgcatgtgcac 104
Query: 225 atgcactgatgtgtatatgtgtaataaataaatttttaaaactaaaagattgtcactaaa 284
|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 103 atgcaccgatgtgtatatgtgtaataaataaatttttaaaactaaaagaaagtcactaaa 44
Query: 285 catgagataaaggctttataacactca 311
||||||||||||| |||||||||||||
Sbjct: 43 catgagataaaggttttataacactca 17
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 711
Length adjustment: 9
Effective length of query: 303
Effective length of database: 702
Effective search space: 212706
Effective search space used: 212706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no295_c05.g1 MSMg01no295_c05.g1 CHROMAT_FILE:
MSMg01no295_c05.g1 PHD_FILE: MSMg01no295_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:59 2005
(286 letters)
>mm_chr4_95445657_95446342
Length = 686
Score = 522 bits (270), Expect = e-153
Identities = 279/282 (98%)
Strand = Plus / Plus
Query: 1 tatttgttgaaggttttggctgtgtagaacctaactgctttcagaagtgctctagaggaa 60
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 201 tatttgttgaaggttttggctgtgtagaacataactgctttcagaagtggtctagaggaa 260
Query: 61 ctgccatttgttgatgaaggacacataagcacttagtattttttaagatgttctgtaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgccatttgttgatgaaggacacataagcacttagtattttttaagatgttctgtaatt 320
Query: 121 tttaatctcctcttctatgagtgatatgtgtgctggaaccaccatgaaaggacccaccat 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaatctcctcttctaagagtgatatgtgtgctggaaccaccatgaaaggacccaccat 380
Query: 181 atggcatacagtggtataccttgtttggggtactatggagaaggctttaataaggaaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggcatacagtggtataccttgtttggggtactatggagaaggctttaataaggaaggg 440
Query: 241 gtgcttcaattggtggactgaataactgactaagcatagttc 282
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgcttcaattggtggactgaataactgactaagcatagttc 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
