BAC Information

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BAC

Clone NameMSMg01-295D22
Chromosome4 (Build37)
Map Location 36,621,235 - 36,621,552
singlet/doubletsinglet
Overlap genenone
Upstream geneLingo2
Downstream geneLOC100042132, LOC545600, LOC621458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295D22.T7 (MSMg01no295_d22.b1)MSMg01-295D22.TJ (MSMg01no295_d22.g1)
ACCAG423193AG423194
length743746
length of high quality
(start - end)
319 (44 - 362)293 (74 - 366)
definitionCHROMAT_FILE: MSMg01no295_d22.b1 PHD_FILE: MSMg01no295_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:07 2005CHROMAT_FILE: MSMg01no295_d22.g1 PHD_FILE: MSMg01no295_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTAAGAAAAATCTCTGCAGAATATCATTCAAATTATACCTGACTACA
ATTATCAAATAGTGATGCTATCATCACCGTCAGAAACTGTGGCATCTCAA
GACTGACTGGGTTTTTCTTTTCCCCTAGGAAACTATTTCAGAGTGAACAA
GAAATGTTATTTACAATGATGACACATCACACTATTTCTGTATTTCTTAA
TAAGGGACATCACTTTTTGACACCATTATCACTGTTTGACAATTAACTTT
TTGCAAGTTTTCATTACAGAAATGTATTATCTAGAGAATACTCATACAAT
ATGTTAGCCCATATNNGAGTAATTCCNTAGCAATGCCCCAATAATGTAGA
CATTTCTTAGGCACAAGTCCCCCGCTCACAANTATNAAAATGCTGTGGGG
AGGTTGGAGAAGCTGGATGTATCATTTTGAAGTTTTATAGTCTAAAATTC
TTCCATTTTACCATGCTTTTTATGTAATTACTCCTTTTATTGATAAACAT
TTTATACGATTTTATACTAGCTTAAGAACATAATCTTGAAAAAACAAAAA
TAGATTTCAGGAAAGATCAAACTTATATTTTACTTAGATTTTTCTTTACA
TTATTAACTTACATGATCTATACGAATGTGACGAACGTCTGAAATAAATC
TGAGTTCCANAAGTATTCTTTATGCCTAACTATAATCACCTTG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CCAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACTGCAGATGCGGTGAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTTTTGGTGGGATTGCAAGCTTGTAAAACCACTCTGGAAATCA
GTCTGGCGGTCCCACAGAAAATTGGACAGAGTACTACCAGAGGATCCTGC
AATATCTCTCCTGTTTAATANTCTCCCCCTCTCCCACCCAGTAAGAAGGA
CACATGCTCCACTATGTTCACACCACCCTAATAAAAAATAGCCAGAGGGT
GGAGGGGAACACAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGGCAAATGGATAGACCTGGAGGGCATCATCCTGAGTGAG
GTAACCCAATCACAAAGGAACTCACACAATATGTACTCATTGATAAGTGG
ATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACTATTTGCTA
AACGCATGAAATTCCAGAACAATGAAGACCCAAGTGTGGACTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_d22.b1 MSMg01no295_d22.b1 CHROMAT_FILE:
MSMg01no295_d22.b1 PHD_FILE: MSMg01no295_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:07 2005
         (319 letters)



>mm_chr4_36621031_36621752
          Length = 722

 Score =  574 bits (297), Expect = e-168
 Identities = 312/319 (97%), Gaps = 5/319 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctaagaaaaatctctgcagaatatcattcaaattatacct----gactacaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||
Sbjct: 205 gaattcctaagaaaaatctctgcagaatatcattcaaattatacctaactgactacaatt 264

                                                                       
Query: 61  atcaaatagtgatgctatcatcaccgtcagaaactgtggcatctcaagactgactgggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atcaaatagtgatgctatcatcaccgtcagaaactgtggcatctcaagactgactgggtt 324

                                                                       
Query: 121 tttcttttcccctaggaaactatttcagagtgaacaagaaatgttatttacaatgatgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttcttttcccctaggaaactatttcagagtgaacaagaaatgttatttacaatgatgac 384

                                                                       
Query: 181 acatcacactatttctgtatttcttaataagggacatcactttttgacaccattatcact 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 385 acatcacactatttctgtatttcttaataagggacatcactttt-gacaccattatcact 443

                                                                       
Query: 241 gtttgacaattaactttttgcaagttttcattacagaaatgtattatctagagaatactc 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtttgacaattaactttttgcaatttttcattacagaaatgtattatctagagaatactc 503

                              
Query: 301 atacaatatgttagcccat 319
           ||| |||||||||||||||
Sbjct: 504 atagaatatgttagcccat 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 722
Length adjustment: 9
Effective length of query: 310
Effective length of database: 713
Effective search space:   221030
Effective search space used:   221030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)