BAC Information

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BAC

Clone NameMSMg01-295I22
Chromosome4 (Build37)
Map Location 134,216,078 - 134,372,069
singlet/doubletdoublet
Overlap geneMan1c1, Ldlrap1, Tmem57
Upstream genePigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1
Downstream geneRhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295I22.T7 (MSMg01no295_i22.b1)MSMg01-295I22.TJ (MSMg01no295_i22.g1)
ACCAG423417AG423418
length761790
length of high quality
(start - end)
323 (43 - 365)232 (128 - 359)
definitionCHROMAT_FILE: MSMg01no295_i22.b1 PHD_FILE: MSMg01no295_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:31 2005CHROMAT_FILE: MSMg01no295_i22.g1 PHD_FILE: MSMg01no295_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,216,078 - 134,216,392)(134,371,840 - 134,372,069)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTCGGGCCACATACTTAGGATGCTTCCAGTGACAGTGTGAGCAGAGAG
CGAGGAGTGCTTGAAAGGATTCCTGCAGCCTCCCTCTGAAAAGAGAGCCT
AATCACGCAGGAGCCGGCAGAGCATCAGGCCATTTGATCGCAAACCCTTG
AAAAAGACACCAAAGAACAATTAACTAGAAAAACCAAAAGGCCTCCTCGT
GATGAACTAGTGGGACCGGCCAAGAGAGAGACAGAGAGAAAACTCAGATC
ATTTGAACTACTTCAGTGATCGCAATCAAAGCACACAGGAGCCCTGGACT
TGCTCGGTTTCTTTATTCTTTCTCCCGACGCGCTGCATCCCCCCCCTGAA
ATCCGAGGCCCCCATTTCTGACAATCTTGACAGATCTGATGGCGCCAGGA
GTTTCTCCTTCCCAAGCTGCCTCCAGATCTGGGGCTTTCCTACTGGGGCC
CGTAAACCTGCCACAGGGAGATGGCAGCTCCCGCAGTGTGGGCAAAACAG
ACCCCTTCCGTGCGCGTAGACCAGACAAATGAGCGGACAGCCGTGACAGG
TGATTCGACAAAGCCGTCAAAAAATTCCTCTTTTCCACACTTGCTTTGGA
GGTACCGCTGTGGGTGATGGTGACTCACTGGGCCTCTTTCATAAATCTCA
GAGACAGGCTCTTCCTGACACTTCCTACGGAGGATAGACTGCGCTGAAAT
TCCCACTCCTG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTAGGTTTCTGAGACTTTCTCTTAGCGTA
CTCAACCAATGTCATTAGGTAGCGATCGTGAAGCCCAGGGTTTCTCAGGC
AGGGACGCTGATCTTAACTATCACACTTTGGAAAGCAGTAATTAAGAGTT
GGTGGAGCTAATGACAGTAGTTAGGAAAAGACTGAAGCATTTTTGTCCTA
TTTTTTTATGAGAATAAATTGTTTTGTATTTTCAAAACAAACCATTTCTC
TGGAGGTAGAAGTGGGTGGATCTCTGAGGCCAACCTGCTCTACAGTGCTT
CATCGTATTTCNCGTGCNTGCCCNGACGGGGCCCGGTGGTGATGAGGTTT
TTTGAGTTTTTNTCCCCTTTCAAAAATTTACTCTAAAAATGGGGGGGGGG
GGGGTGTCCTTCCCTTCTTACTGTTTCATGTTTTACCCTTACTTCCTGAT
CTTGTATTTCGACCGTTTACTTCCGTTTTTGCCTTCCCCACACCTTATAT
TTTCCCCCGAGCCTATTTTTTTTCCCCCTCTTCTCTCCTCCCTAATTCCG
GGCTATTTTATCTTCTTTTTTCCCCCTCTTTTTTTTTTGTTCCTTCTTTT
TCCCTTCTTTTCTCCCGCTCCTTTTTCCCCCTCCACCTTATTTCTTCATA
TCCCGCACTTCTTTGTACCACCCCTTTTTTTGTTGTCTTCTATTTCACCT
CCCCCCTTTTTTCCTTTTCCCCTCTTTTTTGCGCCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_i22.b1 MSMg01no295_i22.b1 CHROMAT_FILE:
MSMg01no295_i22.b1 PHD_FILE: MSMg01no295_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:31 2005
         (323 letters)



>mm_chr4_134215874_134216596
          Length = 723

 Score =  563 bits (291), Expect = e-165
 Identities = 309/315 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcgggccacatacttaggatgcttccagtgacagtgtgagcagagagcgagga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcgggccacatacttaggatgcttccagtgacagtgtgagcagagagcgagga 264

                                                                       
Query: 65  gtgcttgaaaggattcctgcagcctccctctgaaaagagagcctaatcacgcaggagccg 124
           |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 265 gtgcttgaaaggattcctgcagccgccctctgaaaagagagcctaatcacgcgggagccg 324

                                                                       
Query: 125 gcagagcatcaggccatttgatcgcaaacccttgaaaaagacaccaaagaacaattaact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 325 gcagagcatcaggccatttgatcgcaaacccttgaaaaagacaccaaagaacaattagct 384

                                                                       
Query: 185 agaaaaaccaaaaggcctcctcgtgatgaactagtgggaccggccaagagagagacagag 244
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 agaaaaaccaaaaggcctcctcatgatgaactagtgggaccggccaagagagagacagag 444

                                                                       
Query: 245 agaaaactcagatcatttgaactacttcagtgatcgcaatcaaagcacacaggagccctg 304
           |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 agaaaactcagatcgtttgaactacttcagtgatcacaatcaaagcacacaggagccctg 504

                          
Query: 305 gacttgctcggtttc 319
           |||||||||||||||
Sbjct: 505 gacttgctcggtttc 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no295_i22.g1 MSMg01no295_i22.g1 CHROMAT_FILE:
MSMg01no295_i22.g1 PHD_FILE: MSMg01no295_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:31 2005
         (232 letters)



>mm_chr4_134371700_134372331
          Length = 632

 Score =  437 bits (226), Expect = e-127
 Identities = 229/230 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgaagcccagggtttctcaggcagggacgctgatcttaactatcacactttggaaagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 370 gtgaagcccagggtttctcaggcagggacgctgatcttaactatcacgctttggaaagca 311

                                                                       
Query: 61  gtaattaagagttggtggagctaatgacagtagttaggaaaagactgaagcatttttgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gtaattaagagttggtggagctaatgacagtagttaggaaaagactgaagcatttttgtc 251

                                                                       
Query: 121 ctatttttttatgagaataaattgttttgtattttcaaaacaaaccatttctctggaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ctatttttttatgagaataaattgttttgtattttcaaaacaaaccatttctctggaggt 191

                                                             
Query: 181 agaagtgggtggatctctgaggccaacctgctctacagtgcttcatcgta 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 agaagtgggtggatctctgaggccaacctgctctacagtgcttcatcgta 141


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)