Query= MSMg01no295_k02.b1 MSMg01no295_k02.b1 CHROMAT_FILE:
MSMg01no295_k02.b1 PHD_FILE: MSMg01no295_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:37 2005
(694 letters)
>mm_chr4_92805621_92806713
Length = 1093
Score = 1270 bits (657), Expect = 0.0
Identities = 678/685 (98%), Gaps = 1/685 (0%)
Strand = Plus / Plus
Query: 6 aattctgtttaggaaatttctcctggtgccaatgatttcaaggtgttttcccacattctc 65
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 206 aattctgtttaggaaatttctcctggtgccaatgatttcaaggcgttttcccacactctc 265
Query: 66 ttctactagattcagtgtatccgattttatgttgaagtccttaatccacttggacttgag 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttctactagattcagtgtatccgattttatgttgaagtccttaatccacttggacttgag 325
Query: 126 ctttatacaaggagacaaatatgggtctattttcattcttctacatacagacagccagta 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctttatacaaggagacaaatatgggtctattttcattcttctacatacagacagccagta 385
Query: 186 agaccagcaccatttattgaagatgctttctatttttccattgtatatttttggtgtctt 245
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 386 agaccagcaccatttattgaagatgctttctatttttccattgtatatttttggtggctt 445
Query: 246 tgtcaaagatcaagtgacctcgagtatgtggttttatttttaagtcttcaattctatttc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgtcaaagatcaagtgacctcgagtatgtggttttatttttaagtcttcaattctatttc 505
Query: 306 attgatcaatgtgttttaatagttggttttaagagtcaaactttgactgaggagaaaaga 365
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 506 attgatcaatgtgttttaatagttggttttaagagtcaaactttgactgaggaaaaaaga 565
Query: 366 gaggatagatataggactagctgaaggacaaggacataataagctttgagggatgaaagg 425
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 566 gaggatagatataggactagctgaaggaaaaggacataataagctttgagggatgaaagg 625
Query: 426 gaagaggtggaaatatctaaatatatattttgattttaaaaatgaaacttttctcaccaa 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gaagaggtggaaatatctaaatatatattttgattttaaaaatgaaacttttctcaccaa 685
Query: 486 ggttgagagtactacacatatattcatatagatagaaacacttagaaggtaatttatatc 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ggttgagagtactacacatatattcatatagatagaaacacttagaaggtaatttatatc 745
Query: 546 ctttatagaagacaaagaactgaaggacaaaatattctgtgatttttttttcaaatggct 605
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 746 ctttatagaagacaaagaactgaaggacaaaatattctgtgatttttttt-caaatggct 804
Query: 606 catatgttgccctctcatgccaaaggttgcaagtggaagtgatctacatgctttgttact 665
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 805 catatgttgccctctcatgccaaagattgcaagtggaagtgatctacatgctttgttact 864
Query: 666 tcataggtatactatgctttcctag 690
|||||||||||||||||||||||||
Sbjct: 865 tcataggtatactatgctttcctag 889
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1093
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1083
Effective search space: 740772
Effective search space used: 740772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no295_k02.g1 MSMg01no295_k02.g1 CHROMAT_FILE:
MSMg01no295_k02.g1 PHD_FILE: MSMg01no295_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:37 2005
(182 letters)
>mm_chr4_92840042_92840623
Length = 582
Score = 294 bits (152), Expect = 2e-84
Identities = 172/180 (95%), Gaps = 3/180 (1%)
Strand = Plus / Minus
Query: 1 agtggagtttttctggaatgacaagatttggaggttgcattagaagatcacatttgccaa 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 351 agtggagtttttctggaatgacaggatttggaggttgcattagaagatcacatttgctga 292
Query: 61 acacccatggacttaatagagatatccggtctcagaatagaaacaaagtaaataaagaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 acacccatggacttaatagagatatccggtctcagaatagaaacaaagtaaataaagaca 232
Query: 121 gaatcgagagataaggcaaagaaagaagaggggagaggagagg---ggaggggaggggag 177
||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 231 gaatcaagagataaggcaaagaaagaagaggggagaggagaggagaggaggggagaggag 172
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 582
Length adjustment: 8
Effective length of query: 174
Effective length of database: 574
Effective search space: 99876
Effective search space used: 99876
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
