Query= MSMg01no295_n02.b1 MSMg01no295_n02.b1 CHROMAT_FILE:
MSMg01no295_n02.b1 PHD_FILE: MSMg01no295_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:51 2005
(321 letters)
>mm_chr4_150643358_150644078
Length = 721
Score = 497 bits (257), Expect = e-145
Identities = 278/285 (97%), Gaps = 2/285 (0%)
Strand = Plus / Plus
Query: 35 tgaccccacatctgggtaaaaggcatagtcacagagatcccctatctcccgtgtgtcccc 94
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 235 tgaccccacatctgggtaaaaggcatagtcacagagatccccaatctcccgtgtgtcccc 294
Query: 95 atattatagtctctccattttccttctgtagcttcaactaggaagaagctcaggggatat 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 atattatagtctctccattttccttctgtagcttcaactaggaagaagctcaggggatat 354
Query: 155 acagccagggcatcatcagaatg-aaccccaaagagaggatcctagatcttcagagaagc 213
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 355 acagccagggcatcatcaga-tggaaccccaaagagaggatcctagatcttcagagaagc 413
Query: 214 caaaagctccctaaaggatgagtacccccgcttcctcatgagtttctgggggaagggaag 273
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 414 caaaagctccctaaaggatgagtacccccgcttcctcatgagtttctggaggaagggaag 473
Query: 274 ctctgctttctagtgctgggagctcagaactgcatggactaaatg 318
||||||| || |||||||||||||||||||||||||| |||||||
Sbjct: 474 ctctgctctcaagtgctgggagctcagaactgcatggtctaaatg 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no295_n02.g1 MSMg01no295_n02.g1 CHROMAT_FILE:
MSMg01no295_n02.g1 PHD_FILE: MSMg01no295_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:51 2005
(245 letters)
>mm_chr4_150822383_150823027
Length = 645
Score = 443 bits (229), Expect = e-129
Identities = 241/245 (98%)
Strand = Plus / Minus
Query: 1 caaggccctgagtggaaggtgtaggcaaggctgaagtcagactcattgtgagggcagcag 60
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 445 caaggccctgtgtggaaggtgtaggcaaggctgaagtcagactcagtgtgagggcagcag 386
Query: 61 cctaggtgcagggaaagcagcctgggaagctgctcaggtcatggataaaggctgggaaat 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctaggtggagggaaagcagcctgggaagctgctcaggtcatggataaaggctgggaaat 326
Query: 121 gcatggtagtgacagagtctgtgagaaacaatttgtggagctgtccttagcaagtgactg 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 325 gcatggtagtgacagagtctgtgagaaacaatttgtggagctgtcctcagcaagtgactg 266
Query: 181 gattggtggcatttttcccagccctggacaaactggttacttgcttcctggctgcgcctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gattggtggcatttttcccagccctggacaaactggttacttgcttcctggctgcgcctg 206
Query: 241 gatta 245
|||||
Sbjct: 205 gatta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
