BAC Information

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BAC

Clone NameMSMg01-296B16
Chromosome4 (Build37)
Map Location 119,804,125 - 119,804,433
singlet/doubletsinglet
Overlap geneHivep3
Upstream geneSlc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b
Downstream geneEdn2, Foxo6, Scmh1, Slfnl1, Ctps, EG667063, Cited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296B16.T7 (MSMg01no296_b16.b1)MSMg01-296B16.TJ (MSMg01no296_b16.g1)
ACCAG423808AG423809
length727737
length of high quality
(start - end)
314 (36 - 349)212 (56 - 267)
definitionCHROMAT_FILE: MSMg01no296_b16.b1 PHD_FILE: MSMg01no296_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:13 2005CHROMAT_FILE: MSMg01no296_b16.g1 PHD_FILE: MSMg01no296_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACGTA
CCTAAAGCCCACAGAGCTGAACTTGTTCGTCGAGGCATGAGGTCATTGTA
CACTATTATTTACCCAGTATTCTTCTATCTGCTATGTCACTTGGTCGTCT
GCCACGTGGCACTGTGCCTAGTTGGCAGGCAGTGAAACCGGGCTTAGCCT
GAAGTGGCTGTAATCTTGAGTATCCTGTGCTCTCCCCTCAGGAACCAGTG
ATGACCTGCACCAGGACTCAGAGGGGCAAGAGGGCGCCGAGGCTGTGGAG
GAGCACCAGTTCTCAGACCTGGAGGACTCTGACTCAGACTCAGACCTGTT
ATTTTTATGACCACCCCCCCCACCAGGAGGAAGAGAGCCAGGATGATTTG
TCTGCCCCCCGCCTCGAAAAAAGATCCAGCTTGTCTGCCGTCCACACCTA
CGGAGTTATTCCTCACCCGTTCAAGGGCCTTCAGGCTCCATCAAAGCACT
TTTTGAACACGTTCCCCTCCGGGTTTCTCCCCTCCTCCAAAATCCTCCCA
CTTTGATCCCCCCCCCCTCTTTTGTTCTCCCTCCTTTATTCTCGCTTCTC
CCCCCTGAGTCTTTTTCCCCCACCTGGTAACCCCCCGTTCCCTCATTTGA
TAATACAGAGCTATTTTGGTTTTTTTTTTTCCCCCCCCACATTCCACTCC
ACCGCCTTTTCCCTTCCCCTCCTTTAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTAACTACACATACATTTGCTGCTGGACTGTCCTATAGCTCATTAA
TAATTTTTTAAAATATTTTTTGCCCTTGTCTTTTATTTTGGACAGTTTTC
ATTGTTAAAACTTTTTTTTCTATCTGTCTGTCTGTTTGTCTGCCTATCTG
TTTGTGTTTTGAGACAGAGTAGCCTTTACTGTCCTGGAACTTGCTCTGTG
GACCAGACTGGCCTCAAACTCAGAGATCTCAAATTCATAGATGCCTCTGT
CTCTGTCTCTCTGCCTCAGCCTCTGCCTCAGCCTCTGCCTCAGTACATTC
CATGACATGACTCTGTCTCTGCCTCTGCCTCTGCCTCTGCCTCCCCCCCT
GAAAATAAAAAAAACAGCGGGTGATGGCCCTGCTCTCTTTAACAAAGAAT
TTATTTCTACCTTGTTTATTATTCACGCACATTGTATGTCATGTGCCCAC
ATGTATTGTTATATAACAACATTGGATTATTCCGTCCACATTCTTCCCCC
TCTATTTGAATTTCTGTATACGAATAATCATTGCTCTGACTTCTTTTGAT
TTCTTCCCTTTACTGTATGAACCTCCCCTTCATTTGTCCTTACCTACTGT
TCCCTTCTTTTACCCCACCTCCTCTTTCCCCTTCTCTATCTGACCATTTC
TATCGCCTCCTTGACTCTTATTATCCCTTTTATTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_b16.b1 MSMg01no296_b16.b1 CHROMAT_FILE:
MSMg01no296_b16.b1 PHD_FILE: MSMg01no296_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:13 2005
         (314 letters)



>mm_chr4_119803921_119804634
          Length = 714

 Score =  574 bits (297), Expect = e-168
 Identities = 306/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacgtacctaaagcccacagagctgaacttgttcgtcgaggcatgaggtcattgt 64
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacgtacctaaagcccgcagagctgaacttgttcgtcgaggcatgaggtcattgt 264

                                                                       
Query: 65  acactattatttacccagtattcttctatctgctatgtcacttggtcgtctgccacgtgg 124
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acactattatttacagagtattcttctatctgctatgtcacttggtcgtctgccacgtgg 324

                                                                       
Query: 125 cactgtgcctagttggcaggcagtgaaaccgggcttagcctgaagtggctgtaatcttga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cactgtgcctagttggcaggcagtgaaaccgggcttagcctgaagtggctgtaatcttga 384

                                                                       
Query: 185 gtatcctgtgctctcccctcaggaaccagtgatgacctgcaccaggactcagaggggcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtatcctgtgctctcccctcaggaaccagtgatgacctgcaccaggactcagaggggcaa 444

                                                                       
Query: 245 gagggcgccgaggctgtggaggagcaccagttctcagacctggaggactctgactcagac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagggcgccgaggctgtggaggagcaccagttctcagacctggaggactctgactcagac 504

                    
Query: 305 tcagacctg 313
           |||||||||
Sbjct: 505 tcagacctg 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)