BAC Information

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BAC

Clone NameMSMg01-296B19
Chromosome4 (Build37)
Map Location 151,087,459 - 151,087,740
singlet/doubletsinglet
Overlap geneCamta1
Upstream geneLOC677027, Errfi1, Park7, Tnfrsf9, Uts2, Per3, Vamp3
Downstream geneLOC100041960, Dnajc11, Thap3, Phf13, Klhl21, Zbtb48, Tas1r1, Nol9, EG666980, Plekhg5, Tnfrsf25, Espn, LOC100043284, Hes2, Acot7, Gpr153, Hes3, Icmt, Rnf207, Rpl22, Chd5, Kcnab2, LOC100042028, Nphp4, LOC667039, Gm833
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296B19.T7 (MSMg01no296_b19.b1)MSMg01-296B19.TJ (MSMg01no296_b19.g1)
ACCAG423814AG423815
length750749
length of high quality
(start - end)
320 (44 - 363)287 (73 - 359)
definitionCHROMAT_FILE: MSMg01no296_b19.b1 PHD_FILE: MSMg01no296_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:13 2005CHROMAT_FILE: MSMg01no296_b19.g1 PHD_FILE: MSMg01no296_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGAAAATTCCTAGGTCCTCTCCATCTGAGTCCCTTTTAGGCCACCA
GCCGTACATGTCAGCACTGCCCCCTCCCGAGCTTCCCATTCTTCTTGCTA
TGCTTTTTCTCATTCACAAACACCACAGCCCGTTATACTATATATTTTAA
TACCAGAGCCTGTGGGCTATATATTTTATTTACTGTCTTCCCACTGAATG
TATGATAGTTAAGACAGAGATTTAAAACATCTCCTTTGTCCGATGCTTTT
CCTGCAGTTCCCAGATCAGCCCTGAAACATACTTGGTACTTGGGCAAATA
CTTGTTGAATTTANCTACGTGCGNAGCAGACCCACAGAGGATCGATTGGG
GTCCATTGCTTGGCTCACCTGGGACTCAAAAAAATGTTCAGTCTTCTGAC
GGTGTTGAGAAACTTGAGTTTCACTGAGTACCAGGTGCCTCTACTGCTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGATTTTTGTCCCCT
AAGAGGACATCTGTCCCTATCTGGAGATATTTGAGATGCCCATGAGAGAA
CCCCCTGACGTATGTTTATGCGCCCACGTTGTGGTCTGAGCTCATTGATT
CTTTCCCGATCCCATTCTATGTCCTGTATACCCCCTCTTATAATATTTAT
ATCTCGCCCTACTTTTCGTTTCTCCATAATACCCCTTATCAGTCCTCTTT

CAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGAGGTCAACACTTCAGGAGGAAGGGG
TCTGGGCTCAGCCGCAAAGGGAGCAGCAAGCTGCTGATGCTGTTTGGCAA
TCCATCGATGCTCTGCGAGTTAATGCCTTATTATTAGTGTGCATATTTAT
AACGCGCCCTCCAGTTATTAACGGTGATATAATGCCAACTGAGAAAACCA
AGGGACCTCAGAAATATTTACATAGCAGCATAATTAAGACCAGGAGCTGA
GTCACGGAGGGAGCCTAAGGAATAAAAAAGGGACATTCTGGCTTCAGCCC
TGCTCTGATGTTTTTTTTTTGCCCGCCCCCCCCAATACAGCTGTGTCTTC
ACCTTGAATACCCTACACCTTCAATGAAAGAAAACCCTCTGGGAGACTGG
AATGCCCCTCACATAAGACTCTACCAGACTTCTACAGAAAGTCCCCGTGC
ACCAGCCAGAATAGATAGAAGGGAAGAGGGCTAAGCAGGGACCACAGCCT
CCAGACTGTCCAGCTTTGGAGCCCCTGACCAAACCAACATCCCCAGAGAA
ACCACACCACAGATGCTGAGGTCCCCATAGGCAGAGGAAGCTCCCAGACT
GGCCCACAGCCAATCTGTCTTTCCCAGGACCTCAGCCTCATAACAGAAGC
CTTCGACAAGGACACGACACTCCTCCCTCTCCTTTCTCATGGTCTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_b19.g1 MSMg01no296_b19.g1 CHROMAT_FILE:
MSMg01no296_b19.g1 PHD_FILE: MSMg01no296_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:13 2005
         (287 letters)



>mm_chr4_151087255_151087941
          Length = 687

 Score =  522 bits (270), Expect = e-153
 Identities = 279/282 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggtcaacacttcaggaggaaggggtctgggctcagccgcaaagggagcagcaagctgctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggtcaacacttcaggaggaaggggtctgggctcagccgcaaagggagcagcaagctgctg 264

                                                                       
Query: 65  atgctgtttggcaatccatcgatgctctgcgagttaatgccttattattagtgtgcatat 124
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgctgtttggcaatccattgatgctctgcgagttaatgccttattattagtgtgcatat 324

                                                                       
Query: 125 ttataacgcgccctccagttattaacggtgatataatgccaactgagaaaaccaagggac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttataacgcgccctccagttattaacggtgatataatgccaactgagaaaaccaagggac 384

                                                                       
Query: 185 ctcagaaatatttacatagcagcataattaagaccaggagctgagtcacggagggagcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcagaaatatttacatagcagcataattaagaccaggagctgagtcacggagggagcct 444

                                                     
Query: 245 aaggaataaaaaagggacattctggcttcagccctgctctga 286
            ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 445 gaggaaaaaaaaagggacattctggcttcagccctgctctga 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)