Query= MSMg01no296_c21.b1 MSMg01no296_c21.b1 CHROMAT_FILE:
MSMg01no296_c21.b1 PHD_FILE: MSMg01no296_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:18 2005
(287 letters)
>mm_chr4_13093633_13094320
Length = 688
Score = 484 bits (250), Expect = e-141
Identities = 278/292 (95%), Gaps = 9/292 (3%)
Strand = Plus / Plus
Query: 1 aaagccattttctgaatggaccagcagcagggccgaacccccttttgacc-----ctagt 55
|||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct: 201 aaagccattttctgaatggaccagcagcagggccgaaccccca----aacagaatctagt 256
Query: 56 taatgaaagtagtgatgacggatggtcacagatgttgggagagaagtgagagaatgtatc 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 257 taatgaaagtagtgatgacggatggtcacagatgttgggagagaagtgagagaacgtatc 316
Query: 116 caaataaatgatttttattaatgtttcatgtcatacttgaaaaataaataaaaacatttt 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 caaataaatgatttttattaatgtttcatgtcatacttgaaaaataaataaaaacatttt 376
Query: 176 gagatagcccacagtaacaataaatccaaatgcagttcaaagaaataaaaagagcattct 235
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gagatagcctacagtaacaataaatccaaatgcagttcaaagaaataaaaagagcattct 436
Query: 236 tttcctgctacctactagaagcagatttggcagctgctgttacaaatgaaaa 287
||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 437 tttcctgctacctacaagaagcagatttggcagctgctgttacaaatgaaaa 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space: 188762
Effective search space used: 188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no296_c21.g1 MSMg01no296_c21.g1 CHROMAT_FILE:
MSMg01no296_c21.g1 PHD_FILE: MSMg01no296_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:18 2005
(658 letters)
>mm_chr4_13093633_13094690
Length = 1058
Score = 1234 bits (638), Expect = 0.0
Identities = 653/658 (99%)
Strand = Plus / Plus
Query: 1 aaagccattttctgaatggaccagcagcagggccgaacccccaaacagaatctagttaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagccattttctgaatggaccagcagcagggccgaacccccaaacagaatctagttaat 260
Query: 61 gaaagtagtgatgacggatggtcacagatgttgggagagaagtgagagaatgtatccaaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 gaaagtagtgatgacggatggtcacagatgttgggagagaagtgagagaacgtatccaaa 320
Query: 121 taaatgatttttattaatgtttcatgtcatacttgaaaaataaataaaaacattttgaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaatgatttttattaatgtttcatgtcatacttgaaaaataaataaaaacattttgaga 380
Query: 181 tagcccacagtaacaataaatccaaatgcagttcaaagaaataaaaagagcattcttttc 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagcctacagtaacaataaatccaaatgcagttcaaagaaataaaaagagcattcttttc 440
Query: 241 ctgctacctacaagaagcagatttggcagctgctgttacaaatgaaaaggaaaattgtca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgctacctacaagaagcagatttggcagctgctgttacaaatgaaaaggaaaattgtca 500
Query: 301 tgcacaaggttcatcttctcatgactgatgggcattttctttcaaaaatgtggctattta 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 tgcacaaggttcatcttctcatgactgatgggcattttctttcaaaaacgtggctattta 560
Query: 361 taatcataaataaaatttctgttgtcttatgaacaacagaccatgagtcttatggatttg 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatcataaataaaatttgtgttgtcttatgaacaacagaccatgagtcttatggatttg 620
Query: 421 cctcccaagagttaaataacatcttaattccatttgacagtaaggataaggcacccttct 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctcccaagagttaaataacatcctaattccatttgacagtaaggataaggcacccttct 680
Query: 481 actgtgatagataatcccaggctcagagtggaggggctggaagagcaacagggaggcaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actgtgatagataatcccaggctcagagtggaggggctggaagagcaacagggaggcaga 740
Query: 541 ggagaggggacatccatctttctaagcaatttatgaattgagccttaaatgcttaatgta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggagaggggacatccatctttctaagcaatttatgaattgagccttaaatgcttaatgta 800
Query: 601 ctagatggtgagtttgtgtgctaatgcatacttgattgaagttgctttaaaatgctaa 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctagatggtgagtttgtgtgctaatgcatacttgattgaagttgctttaaaatgctaa 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
