BAC Information

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BAC

Clone NameMSMg01-296I24
Chromosome4 (Build37)
Map Location 150,599,767 - 150,600,058
singlet/doubletsinglet
Overlap geneCamta1
Upstream geneLOC100041882, Eno1, LOC666880, LOC384091, Rere, Slc45a1, LOC677027, Errfi1, Park7, Tnfrsf9, Uts2, Per3, Vamp3
Downstream geneLOC100041960, Dnajc11, Thap3, Phf13, Klhl21, Zbtb48, Tas1r1, Nol9, EG666980, Plekhg5, Tnfrsf25, Espn, LOC100043284, Hes2, Acot7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296I24.T7 (MSMg01no296_i24.b1)MSMg01-296I24.TJ (MSMg01no296_i24.g1)
ACCAG424141AG424142
length732750
length of high quality
(start - end)
---293 (128 - 420)
definitionCHROMAT_FILE: MSMg01no296_i24.b1 PHD_FILE: MSMg01no296_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:47 2005CHROMAT_FILE: MSMg01no296_i24.g1 PHD_FILE: MSMg01no296_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGCCAAAGAAATGTTTACTTCCTTCA
GAAACATGTGTGCGTCATTTTAGCCCGAGGCAGGAGGCTGACCTAAATGG
GATGGATATCCACCTTCAATATGGCGACTCCTCTCTCCTGCTCATCCCTA
CTGCGGGTTAAAGGGATTCTGGCTGTGTCTCTAAGGACAAGTGAAACAGA
AGGCCCTAGTCCCACCCAACTTCTTAGAGGCCCTGAGGTGGCTCTGCCTA
TTTTCTGCAGGCCCCACTGTCCCTGGTTCTCTGAAGTCCCCTAAGACATT
GGTCCATGCTCACCCGCTGATCTCAGGGCTGGGGACTGAGCCGAATATAA
GAATGGCCTGCAGCGGACCCCACCCGACATGGGCAAGATGTCCTTGTCCC
CTCTAGGTGAGAAGAGACCATCTGTGCTCCTTTTAGGCCACACGATGCAC
AGGCAACTGGGCCACGGATATGACCCACGCCCCCAAACCAGCTATGACAT
GAAGTCCGCTGGACCGGACACAGGTCATCAGGGGTGAGTTGTGAGGGTTT
GTGCTTCGAGATCTCTGGGTTGAAGTACATCATCTACTTGAAGATGCAGT
GTCAGCAAGCTTGGGACCCCATCTGCCCGATAAGAAAATGACCTAAGGGC
ATTCCTATGAGTGAATAAAGTCTATAGCAGTGGTACCTGGTGTGTGCAGT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_i24.g1 MSMg01no296_i24.g1 CHROMAT_FILE:
MSMg01no296_i24.g1 PHD_FILE: MSMg01no296_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:47 2005
         (293 letters)



>mm_chr4_150599567_150600259
          Length = 693

 Score =  542 bits (280), Expect = e-158
 Identities = 289/292 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcaggaggctgacctaaatgggatggatatccaccttcaatatggcgactcctctctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aggcaggaggctgacctaaatgggatggatatccaccttcaatatggcgactcctctctc 433

                                                                       
Query: 61  ctgctcatccctactgcgggttaaagggattctggctgtgtctctaaggacaagtgaaac 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctggtcatccctactgcgggttaaagggattctggctgtgtctctaaggacaagtgaaac 373

                                                                       
Query: 121 agaaggccctagtcccacccaacttcttagaggccctgaggtggctctgcctattttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 agaaggccctagtcccacccaacttcttagaggccctgaggtggctctgcctattttctg 313

                                                                       
Query: 181 caggccccactgtccctggttctctgaagtcccctaagacattggtccatgctcacccgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 caggccccactgtccctggttctctgaagtcccctaagacattggtccatgctcacccgc 253

                                                               
Query: 241 tgatctcagggctggggactgagccgaatataagaatggcctgcagcggacc 292
           ||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 252 tgagctcagggctggggactgagctgaatataagaatggcctgcagcggacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)