BAC Information

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BAC

Clone NameMSMg01-296J03
Chromosome4 (Build37)
Map Location 10,146,874 - 10,147,182
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039584, 4933402J24Rik, Asph, Gdf6, 4930448K20Rik
Downstream geneLOC666840, 1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296J03.T7 (MSMg01no296_j03.b1)MSMg01-296J03.TJ (MSMg01no296_j03.g1)
ACCAG424146AG424147
length7171,049
length of high quality
(start - end)
315 (23 - 337)---
definitionCHROMAT_FILE: MSMg01no296_j03.b1 PHD_FILE: MSMg01no296_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:48 2005CHROMAT_FILE: MSMg01no296_j03.g1 PHD_FILE: MSMg01no296_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGATGGCTCCAACTGTCT
ACTACACAGCTATATCCCAGGTGCAGTGGTTGCAGTAATAGGGACATAAA
ATAAATAAAAACAGAGAGTCTCCTTGACTTTACAGCCTTGTAGTAAAGGA
TAGCTAGGTTCTCCAGACACAAGAGAAAGGATAAGAGATAAGTAAATAAT
TTCAGACTTGTTAGAGATTGGGTTGTCTGGGAAGATCTTTCTTAGGTAGA
TGCTCATTTTGACACATGGGTGATACGAAGGACTGTGCCACAAGAAGATA
TTATCAATATCACTGTAGATGTAGAAGAACAAATACAGATTTTTTTTTAG
AACCCCCGCCCGATAACACCTGAGGGAGGAAAAGACCTACTGTAGCTCGC
CAGTAAAGGAAAAGAACTAACTCCACGGGAAGGATGTGAAAGAGCTGAAG
TCAGGAGGCATTTGGAGCAGACCAGAGAGACCACACTTTATCTTCAAAGA
CAGATGATGAACTTGGTTAAGTTAGGATAGAACTCTGAAAGCTTGGATCT
GCTGTTACATGCTCCTCCAAAAAGACAGAGGTTTCCATTATATCCGATTC
ATAACTTTTGGACCCACTTACATAATACAAGATCCAGTGGTTACCCTGAG
AAGCTGAGTATTGCAGTAATATCATATCTATACAAACAGTTGGATATGCT
GGGCTCCAGACATCAAG
AACATATTTGGTNGGTATGAGTAAGAAGAAGAGGGGGGGCGGGGTGTNNN
NNTTTGAAATGAAGAGAGAAGGTTTGGTTGGTGGCCTGGTTTTTCCAAAA
AGAGGNNGANCNNAGAGGAAGGTTCCCAGAAAAAGAGGGNANNAAAAGAA
GGGGGGNANNGGGGAGGAAAAACGGGNAAANNTTTATATATTCCTAAAAA
AAGAGAGGGGGGGAGANNATTTAATGGAATGTTATGTATATTATTGTAAG
TATATATAGTGATGTATATTAAAGTTGGTGGATGAAAAGAGTGTGATGTT
ATGNTTNTGAGTAAAATGTGGGAGGGTTTTTAAGTGAGAATTGATGTAGG
TGTTATTTTTTTGATTTTTGGGAAGTTATTGTGGTAGTTATATGTGGATG
TTTAAGAGTGATTTATTAAATAAGATGTAGTAAGAAAAGGTTTTTTTTTT
TTTTTTAAGGGAGGNGGGAAAGGAGGAAAGAAGNAAAAAGGAAAATTTTT
AGGTGGAGATTCCCGCGAGGCAGGAGCCCCCGGCAGAANAATAGGAGGGA
AGAANNGGGNGGGGGGGGGGGNGGCCNNCCAAAAAAAANNAAACCCNCAA
AAAAACGGGGCCCCCCCGCCCCCCGGGGGCCNCCAAACAGCCAAGAGAAC
AAGAGAAGGAAGGAAAAAAAGAAGGAGGGGAAAAAAAAGAGGGAAAAAGA
AAAGGAAGAGGGAGAGAGGAAGAGAAGGAAAGCGGAAACGGGGGGGGAAG
GAAGAAAGGGAGGAGGAAGAGAAGGGAAGGGAGGAGAGGGAAAGGAAGAA
NCAAAGAAAGAAAGAGGAGAGAGGAAGGAGTAGAGAGAAATAAAAAACGG
AGGGAAAGGACGTGAGAGAGTAAGAAGGGGGAGGAGGAGANAGGGGAGAA
GGGGGGAGGGGGGACATGGATGTCTTGTATTGAGTGGGGGCTGGAGGGAA
ACTGAAGAGAGTATTGAATAAATTATATAAAAATAGNAGAGATAATAAAG
GTGGTGGGTGTTATTGAGAGAGTGTTAAATTATTTATATATAATATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_j03.b1 MSMg01no296_j03.b1 CHROMAT_FILE:
MSMg01no296_j03.b1 PHD_FILE: MSMg01no296_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:48 2005
         (315 letters)



>mm_chr4_10146670_10147384
          Length = 715

 Score =  574 bits (297), Expect = e-168
 Identities = 306/309 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagatggctccaactgtctactacacagctatatcccaggtgcagtggttgcagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattcagatggctccaactgtctactacacagctatatcccaggtgcagtggttgcagt 454

                                                                       
Query: 65  aatagggacataaaataaataaaaacagagagtctccttgactttacagccttgtagtaa 124
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aatagggacataaaataaacaaaaacagagagtctccttgactttacagccttgtagtaa 394

                                                                       
Query: 125 aggatagctaggttctccagacacaagagaaaggataagagataagtaaataatttcaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 393 aggatagctaggttctccagacacaagagaaaggataagagataagtaaataatttctga 334

                                                                       
Query: 185 cttgttagagattgggttgtctgggaagatctttcttaggtagatgctcattttgacaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cttgttagagattgggttgtctgggaagatctttcttaggtagatgctcattttgacaca 274

                                                                       
Query: 245 tgggtgatacgaaggactgtgccacaagaagatattatcaatatcactgtagatgtagaa 304
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tgggtgatacgaaggactgtgtcacaagaagatattatcaatatcactgtagatgtagaa 214

                    
Query: 305 gaacaaata 313
           |||||||||
Sbjct: 213 gaacaaata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)