Query= MSMg01no296_m10.b1 MSMg01no296_m10.b1 CHROMAT_FILE:
MSMg01no296_m10.b1 PHD_FILE: MSMg01no296_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:03 2005
(554 letters)
>mm_chr4_128189552_128190506
Length = 955
Score = 978 bits (506), Expect = 0.0
Identities = 543/558 (97%), Gaps = 7/558 (1%)
Strand = Plus / Minus
Query: 1 catagagccagaggaaagagatggctctcggggttgtaagaacacttctcaacatgcctc 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 catagagccagaggaaagggatggctctcggggttgtaagaacacttctcaacatgcctc 696
Query: 61 cttaaggttccccaggaaggcgccttctcctatctcctaccttaaatgtctggattgcat 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 695 cttaaggttccccaggaaggcgccttctcctatttcctaccttaaatgtctggattgcat 636
Query: 121 ctcagggctctggcccaaggagtgcaatataaaactgggaaactcataacgcaggattta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ctcagggctctggcccaaggagtgcaatataaaactgggaaactcataacgcaggattta 576
Query: 181 tagtcctggagaaggctgtgagtgacggtttcaatacactgctgagacagctcttggaag 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 575 tagtcctggagaaggctgtgagtgacgatttcaatacactgctgagacagctcttggaag 516
Query: 241 cttgggagaataatggactacatttaacaaagcagaggcagttgaggtgttgtggcaaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cttgggagaataatggactacatttaacaaagcagaggcagttgaggtgttgtggcaaac 456
Query: 301 tgggaaggaagcgtcctgaagtgaggagagcaacctgcttcaacagttctatcttgag-a 359
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 455 tgggaaggaagcgtcctgaagtgaggagagcaacctgcttcaacagttctatcatgagga 396
Query: 360 aaaaaaaaaaaac---cttcatgcctaataattgtttaccttgggaaagcctgggggggg 416
||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 395 aaaaaaaaaaaacaaacctcatgcctaataattgtttaccttgggagagcctgggggggg 336
Query: 417 gggacgactccatgggacaaggctccttaggagtaagtgggatgagaagactctgggaca 476
||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 335 gggac---tccatgggaccaggctccttaggagtaagtgggatgagaaaactctgggaca 279
Query: 477 cagagtcttcacagactggaggaagagcgccatgattggaagtgggtagtaaggctgggg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cagagtcttcacagactggaggaagagcgccatgattggaagtgggtagtaaggctgggg 219
Query: 537 tagtagctggaaggtctg 554
||||||||||||||||||
Sbjct: 218 tagtagctggaaggtctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 955
Length adjustment: 10
Effective length of query: 544
Effective length of database: 945
Effective search space: 514080
Effective search space used: 514080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no296_m10.g1 MSMg01no296_m10.g1 CHROMAT_FILE:
MSMg01no296_m10.g1 PHD_FILE: MSMg01no296_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:03 2005
(287 letters)
>mm_chr4_128147840_128148526
Length = 687
Score = 551 bits (285), Expect = e-161
Identities = 285/285 (100%)
Strand = Plus / Plus
Query: 2 cccccccctgcccccgtatctgcttgttgtattttcccatcttcatttctctcatggctt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 cccccccctgcccccgtatctgcttgttgtattttcccatcttcatttctctcatggctt 261
Query: 62 cgatctctttgtgtccttttcctatagattctgggaaaataccctaacttcacagccaca 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cgatctctttgtgtccttttcctatagattctgggaaaataccctaacttcacagccaca 321
Query: 122 tcatttctggacatctgcacaatccacaagccacacgtcagggtgccccaagtcacatgt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcatttctggacatctgcacaatccacaagccacacgtcagggtgccccaagtcacatgt 381
Query: 182 tagagcaggcgtctgtctcctcccttcctgtgtagccttcgctgacttcagtgcctccct 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tagagcaggcgtctgtctcctcccttcctgtgtagccttcgctgacttcagtgcctccct 441
Query: 242 ctgccatatcttccttgggcatcagaggtgccatgctccacttaa 286
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctgccatatcttccttgggcatcagaggtgccatgctccacttaa 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
