BAC Information

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BAC

Clone NameMSMg01-296N04
Chromosome4 (Build37)
Map Location 12,076,329 - 12,076,860
singlet/doubletsinglet
Overlap genenone
Upstream geneTrp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b
Downstream gene6720467C03Rik, LOC545592, OTTMUSG00000004461
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296N04.T7 (MSMg01no296_n04.b1)MSMg01-296N04.TJ (MSMg01no296_n04.g1)
ACCAG424326AG424327
length756765
length of high quality
(start - end)
539 (45 - 583)167 (109 - 275)
definitionCHROMAT_FILE: MSMg01no296_n04.b1 PHD_FILE: MSMg01no296_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:07 2005CHROMAT_FILE: MSMg01no296_n04.g1 PHD_FILE: MSMg01no296_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTTTGTATACCAAGATGGCCTCGAACTCAGAAATCTGCCTCCCTC
TGCCTCCCAAGTGCTGTTATTACCGGCGTAGTTAAGTACCATACCTTTTA
TTCTTTAAATGCAACTTTAAAAGCAAATAGATACTCCTAAAAATATTTTT
ATCGTGATTTAAGAAAGTGACACAACAATAAATATTTATAGACAGGGTAT
AATCAGGGATGTGCTGGTATTAAAATTGGTTCCCTAACATAGTCTGACTT
CAGGCACCTTGTTTGACTTTCTAAACTTCATTTCTCATTTATAAAATACA
GTTATAATAAACATTGAGATCATACACATAAAGTGCTTATTGGCTAATAT
AAGTATCCACTGTCAACTATTTCTATTATTGTGGACAAGGAAAATCTAAT
TGAGTACAAAAACATGAGTATCAAAAAAGCCAAAATTCATTCAGAAATCT
GTATTTAGTGAGTCTGAGTTAACTACTGAATACTATGAACCACCACTAAG
TTCTTCCTAGAAAAACCCATATTCTTCCCCAGCCTGAGAGTTCCCGTTAC
CCTAAACAGATTAGTTTACTGTCTTCTGAACGTTTTGTGTTAGTCTTTGC
AATCTACTTAGGGGAACACCTACAGCCCAGTGCTAAGATTAAATGGTGTT
GAAGAAATCATAGACCTGTACATCATTAGTACAGATTAGATGTCCTGCTC
AGCACA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXATATCATCAACACTCACATAACAAACCTGGTGTGGCTGTTTACA
TCGGCACCTCCAGAGCTTGCGGTGAGGAATCCCTGGGACTTGCTGGCTTG
TCATTTTAGCCAAACTGGTAAGATTCAGGCTTAATAAGAGACATTATCAA
AAACAGGGATTATTACAGGAAAGGACTTCATGTTGACCTTTGTTTTCCAC
AAGCACACACATGCATACATACACATGTATACACATGTAAACACACATCA
TACAATAAAGTAAATTTAAAAAAAAAATCCTGAAAGCANGAGCCTACAAT
AATCTCCNNTTCGGGTGCCCCCATTGGGACTTGTCTTCATAACTATTCCC
CCACTATAAAACGCACCCCAAAAGGCCTGGGGGGGGAGGATTTGCATGAC
GATCTGCATGAAGGTTATTCTTACGAAAGTTTCAGACGCCTACTCCTTTA
TTATGGTGTTTAGCATGCGTGTTATCATGTCTGCTCACCTGCCTGTTTAG
TGCACCACCCGTATAGTTACCCTCCTGTTTCTATTGGACTCCCAATTATA
TTAGCTTTTGCCCCCTATATATTCTTCCCCAGCCATTTTTTTTTCTCCTC
TCTTCATTTATTTCAAACCAACAACCTCCTTTCTCTCTTCTCCCCCCTCA
TTATTCTCCTTTTTCTTAAATTTTCAATTTTCCTCTTTTCTTGACGTCTT
TTTCCCTTATTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_n04.b1 MSMg01no296_n04.b1 CHROMAT_FILE:
MSMg01no296_n04.b1 PHD_FILE: MSMg01no296_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:07 2005
         (539 letters)



>mm_chr4_12076028_12076966
          Length = 939

 Score =  959 bits (496), Expect = 0.0
 Identities = 523/532 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactttgtataccaagatggcctcgaactcagaaatctgcctccctctgcctcc 63
           ||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 833 ggaattcactttgtagaccaggctggcctcgaactcagaaatctgcctccctctgcctcc 774

                                                                       
Query: 64  caagtgctgttattaccggcgtagttaagtaccataccttttattctttaaatgcaactt 123
           |||||||||  ||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 caagtgctgggattaaaggcgtagttaagtaccataccttttattctttaaatgcaactt 714

                                                                       
Query: 124 taaaagcaaatagatactcctaaaaatatttttatcgtgatttaagaaagtgacacaaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 taaaagcaaatagatactcctaaaaatatttttatcgtgatttaagaaagtgacacaaca 654

                                                                       
Query: 184 ataaatatttatagacagggtataatcagggatgtgctggtattaaaattggttccctaa 243
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 653 ataaatatttatagacagggtataatcagggatgtgctggtattgaaattggttccctaa 594

                                                                       
Query: 244 catagtctgacttcaggcaccttgtttgactttctaaacttcatttctcatttataaaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 catagtctgacttcaggcaccttgtttgactttctaaacttcatttctcatttataaaat 534

                                                                       
Query: 304 acagttataataaacattgagatcatacacataaagtgcttattggctaatataagtatc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 acagttataataaacattgagatcatacacataaagtgcttattggctaatataagtatc 474

                                                                       
Query: 364 cactgtcaactatttctattattgtggacaaggaaaatctaattgagtacaaaaacatga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cactgtcaactatttctattattgtggacaaggaaaatctaattgagtacaaaaacatga 414

                                                                       
Query: 424 gtatcaaaaaagccaaaattcattcagaaatctgtatttagtgagtctgagttaactact 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gtatcaaaaaagccaaaattcattcagaaatctgtatttagtgagtctgagttaactact 354

                                                               
Query: 484 gaatactatgaaccaccactaagttcttcctagaaaaacccatattcttccc 535
           |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gaatacaatgaaccaccactaagttcttcctagaaaaacccatattcttccc 302


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)