Query= MSMg01no296_o11.b1 MSMg01no296_o11.b1 CHROMAT_FILE:
MSMg01no296_o11.b1 PHD_FILE: MSMg01no296_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:13 2005
(182 letters)
>mm_chr4_37104839_37105422
Length = 584
Score = 284 bits (147), Expect = 2e-81
Identities = 173/182 (95%), Gaps = 2/182 (1%)
Strand = Plus / Plus
Query: 1 gcaaaga-atgggaaggncacattttct-aaaaaactctcatactttgaatgatggcttg 58
||||||| |||||||| |||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 201 gcaaagacctgggaaggtcacattttctaaaaaaactctcatactttgaatgatggattg 260
Query: 59 acagagtcattcattccatttttggacattaattgataagctattctgctcctatcattg 118
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 acagagtcattcattccatctttggacattaattgataagctattctgctcctatcagtg 320
Query: 119 ttgtgtcagggttaagaacactgaggtgtaagtcaaagacaattggctacaagtcgctgc 178
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 gtgtgtcagggttaagaacactgaggtgtaagtcaaagacaattggctacacgtcgctgc 380
Query: 179 ta 180
||
Sbjct: 381 ta 382
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 584
Length adjustment: 8
Effective length of query: 174
Effective length of database: 576
Effective search space: 100224
Effective search space used: 100224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no296_o11.g1 MSMg01no296_o11.g1 CHROMAT_FILE:
MSMg01no296_o11.g1 PHD_FILE: MSMg01no296_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:13 2005
(553 letters)
>mm_chr4_37104824_37105778
Length = 955
Score = 973 bits (503), Expect = 0.0
Identities = 542/555 (97%), Gaps = 2/555 (0%)
Strand = Plus / Plus
Query: 1 gccactgatgtaactgcaaaga-atgggaaggtcacattttct-aaaaaactctcatact 58
|||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 201 gccactgatggaactgcaaagacctgggaaggtcacattttctaaaaaaactctcatact 260
Query: 59 ttgaatgatggcttgacagagtcattcattccatttttggacattaattgataagctatt 118
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 ttgaatgatggattgacagagtcattcattccatctttggacattaattgataagctatt 320
Query: 119 ctgctcctatcagtggtgtgtcagggttaagaacactgaggtgtaagtcaaagacaattg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgctcctatcagtggtgtgtcagggttaagaacactgaggtgtaagtcaaagacaattg 380
Query: 179 gctacaagtcgctgctaatggactgactcatatgtaggtgtgttaaattccacttctgtt 238
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctacacgtcgctgctaatggactgactcatatgtaggtgtgttaaattccacttctgtt 440
Query: 239 tcgttgtctgtgagaataagtcacagctaccacaatctgtgctaaggggctcaaagaaat 298
|| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 tcattgtctgtgagaataaatcacagctaccacaatctgtgctaaggggctcaatgaaat 500
Query: 299 aactatatgaagattcagttaggtttctgacatccagtgaactcagtaactttattttct 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aactatatgaagattcagttaggtttctgacatccagtgaactcagtaactttattttct 560
Query: 359 cccttgccctatatttttgtaaccaaataacaacagtgaagaaagccatgaaaggcaacc 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 cccttgccctatatttttgtaaccaaataacaacagtgaagaaagccatgaaagccaacc 620
Query: 419 catgaatgacctatagtggggctcaaaatatgtctgaaaaaataatgatcttgctgaatt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catgaatgacctatagtggggctcaaaatatgtctgaaaaaataatgatcttgctgaatt 680
Query: 479 tagtccacaatctataagttatatatgacattttgaactacattcatggcctgctgtatg 538
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 681 tagtccacaatctataagttatatatggcattttgaactacattcatggcctgctctatg 740
Query: 539 ttttgaatcctgtgc 553
|||||||||||||||
Sbjct: 741 ttttgaatcctgtgc 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 955
Length adjustment: 10
Effective length of query: 543
Effective length of database: 945
Effective search space: 513135
Effective search space used: 513135
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
