BAC Information

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BAC

Clone NameMSMg01-296O23
Chromosome4 (Build37)
Map Location 142,920,728 - 142,921,000
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546484, 6330411D24Rik, Prdm2, LOC666018, EG626575, LOC433776, Pdpn
Downstream geneLrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296O23.T7 (MSMg01no296_o23.b1)MSMg01-296O23.TJ (MSMg01no296_o23.g1)
ACCAG424410AG424411
length742766
length of high quality
(start - end)
274 (148 - 421)---
definitionCHROMAT_FILE: MSMg01no296_o23.b1 PHD_FILE: MSMg01no296_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:15 2005CHROMAT_FILE: MSMg01no296_o23.g1 PHD_FILE: MSMg01no296_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGT
CTCAGAATCATCCTTAAGTTGTTGGTGGTGGTGTTTCTCTACAAGAAGGA
AGAGGAGGAGGAGGCGGTCTCAACGCATCAGCAAAACACAAACATAAATA
TCATCTGTGCAGTTAGCTCCACTGATGATGATGCTCGTCTGGAGATGCAC
CGGCAAGTACAGAGAGCCAAGCAACCTCCCCAGCAGCATCCACGGGCACC
CTCCCTGGACCGCGCCTTTTCCCTCTCTCTGCTCCCAAGACCATGTCTCT
CAGCACCTCCAACTGGGAGACACAACGCAAATGCTTCCTCCCCAGTTTCA
GGGCTTTGGAGGATCAACTGCTGACGTCAGAGACAAATTGCTCCGGCTGG
TTCAGGTCTAGAATTTCACAGCCTTCCGTGCCAGGAAGGTCTAAGCCCTG
TAATGGGACACAGATGGAGCAATACTGACATGAGAGAGCTGTCCTGCCTG
GATTACTAACCAGTGCTGGGCTACAGGGAAAAGCCCGGCTTGTCTGCAGC
TCCAGACACTGAGAGGCCTAGGGGAGAGGGTCACTGGAACCTAGGGGTTC
ACTGCCAGCCTGGGGTAATAACAAGGGTATGTCTCAGAAATA
NGGGGGGGGGGGGNNNGNGGCGCCCNCCCNCCNCTGCNNNNNNCCGAAGA
AGGGAGAGGCCGGNGGNGNCGGGATTCGAACCAGNNNGNNNNNNGNNGGT
CCCCAAAAAAGANNGGNNGNGNNNNGNNGNNGNNNNGGGNNNNNNNGGNT
TTTTNCCCCNNGNGGGGGGGGGNGNGNNNNNGGNNNNNGAANNNNNNNNN
NGNGGNGGGGGGNGGGGNNNNNNNNNNNGNNGGNNGAGGAGGNGGAGGNG
GNNNNNNNGNNNNNGNNNNNGNNNGGNNNNNNNGGTTTTTGTGNNGNTAG
NTNNANTGATGATGATGGTNGTTTGGAGATGGANGGGNAAGNANAGAGAG
TTTTTATAGTTTTAAGNAGGAGNGAGGGGNAGGNNNNAGGGANGGGGGAN
AGGCCCCCCCNCAGGGCGGAAGACCAGGGCACNCAGCACCNCCAACGGGG
AGAGAAAAGGAAAAGGAGACCGCCCCAGGNGCAGGGCNGGGGAGGAACAA
CGGCGGACGNCAGAGACAAANGGCNCCGGCCGGNNCAGGGCGAGAANGNC
ACAGCCNNCCGGGCCAGGAAGGGCGAAGCCCGGGAAAGGGACACAGAGGG
AGCAANACGGACAAGAGAGAGAGGGCCGGCCAGGAACACAAAACAGAGCG
GGGCAACAGGGAAAAGCCAGGCNAGACAGCAGCACCTTTTTTTTATAGGT
CAAGGGGAGAGGGGGACTGGGACCAAGGGGGTCATTGCCAGTCTGGGAAA
ATAACAGGGAATGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_o23.b1 MSMg01no296_o23.b1 CHROMAT_FILE:
MSMg01no296_o23.b1 PHD_FILE: MSMg01no296_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:15 2005
         (274 letters)



>mm_chr4_142920528_142921201
          Length = 674

 Score =  497 bits (257), Expect = e-145
 Identities = 269/273 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtctcagaatcatccttaagttgttggtggtggtgtttctctacaagaaggaagaggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tgtctcagaatcatccttaagttgttggtggtggtgtttctctacaagaaggaagaggag 414

                                                                       
Query: 61  gaggaggcggtctcaacgcatcagcaaaacacaaacataaatatcatctgtgcagttagc 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gaggaggaggtctcaacgcatcagcaaaacacaaacataaatatcatctgtgcagttagc 354

                                                                       
Query: 121 tccactgatgatgatgctcgtctggagatgcaccggcaagtacagagagccaagcaacct 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 353 tccactgatgatgatgctcgtctggagatgcaccggcaagtacggagagccaagcaacct 294

                                                                       
Query: 181 ccccagcagcatccacgggcaccctccctggaccgcgccttttccctctctctgctccca 240
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 293 ccccagcagcatccacgggcaccctccctggaccgcgcccattccctctctctgctccca 234

                                            
Query: 241 agaccatgtctctcagcacctccaactgggaga 273
           |||||||||||||||||||||||||||||||||
Sbjct: 233 agaccatgtctctcagcacctccaactgggaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)