Query= MSMg01no297_e06.b1 MSMg01no297_e06.b1 CHROMAT_FILE:
MSMg01no297_e06.b1 PHD_FILE: MSMg01no297_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:40 2005
(622 letters)
>mm_chr4_141976230_141977250
Length = 1021
Score = 1156 bits (598), Expect = 0.0
Identities = 613/618 (99%), Gaps = 1/618 (0%)
Strand = Plus / Minus
Query: 5 gaattccatcactggcctacactgtggtcaagaagaataacaaaaaccacttctcgaatt 64
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 821 gaattccatcactgggctacactgtggtcaagaagaataacaaaaaccac-tctcgaatt 763
Query: 65 attctccccttcccccacttgtaaacgcatattgcatgcagacgtctaccatgcaagctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 attctccccttcccccacttgtaaacgcatattgcatgcagacgtctaccatgcaagctc 703
Query: 125 cctgcacacaccttgcaatgggcacggtgtagccgctgctcatttttcttccctgtcacc 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gctgcacacaccttgcaatgggcacggtgtagccgctgctcatttttcttccctgtcacc 643
Query: 185 tgttcagagaaggacagccatttcctctaatagacaaggggcttctgcttcccttcgggg 244
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tattcagagaaggacagccatttcctctaatagacaaggggcttctgcttcccttcgggg 583
Query: 245 actattcaagtatcctaatttcaggatatcacagagagaattgaaaacgaaaataaatgt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 actattcaagtatcctaatttcaggatatcacagagagaattgaaaacgaaaataaatgt 523
Query: 305 ccacatctctcttccttaattctctgctttttcttattctgttctccctctgcctcattt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ccacatctctcttccttaattctctgctttttcttattctgttctccctctgcctcattt 463
Query: 365 ccatccagaaagttcttgccctgtattttctgaaaattagaaaatcagacccttaatttg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ccatccagaaagttcttgccctgtattttctgaaaattagaaaatcagacccttaatttg 403
Query: 425 cgtgtctgcaagtgctggcgagggagccggggagcgcagattcaaagcagccctgtcaga 484
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cgtgtctgcaagtgttggcgagggagccggggagcgcagattcaaagcagccctgtcaga 343
Query: 485 acactccattctgccatcagcgtgggtcttgctctctttggagaggggagtgatgccaga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 acactccattctgccatcagcgtgggtcttgctctctttggagaggggagtgatgccaga 283
Query: 545 atgctctctaattatacccccacctttcattcctacagagcctgggacagctgagaaacc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 atgctctctaattatacccccacctttcattcctacagagcctgggacagctgagaaacc 223
Query: 605 attgtccttgcctgagaa 622
||||||||||||||||||
Sbjct: 222 attgtccttgcctgagaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1021
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1011
Effective search space: 618732
Effective search space used: 618732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_e06.g1 MSMg01no297_e06.g1 CHROMAT_FILE:
MSMg01no297_e06.g1 PHD_FILE: MSMg01no297_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:40 2005
(556 letters)
>mm_chr4_141818395_141819350
Length = 956
Score = 1009 bits (522), Expect = 0.0
Identities = 549/558 (98%), Gaps = 3/558 (0%)
Strand = Plus / Plus
Query: 1 acag-tttttggctatgttgacaaccc-ctaatctttctgtctctctctattctgctcag 58
|||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 200 acagttttttggctatgttgacaacccgc-aatctttctgtctctctctattctgctcag 258
Query: 59 tgctggggtcacaggcatgtacagggccacggccagcctgtgctggaatctgaaccccag 118
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 259 tgctggggtcacaggcatgtacagtgccacggccagcctgtgctggaatctgaaccccag 318
Query: 119 ttctcatgagtgggtggcaagcactttaccctctaagccatctccccagtccctgaggat 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttctcatgagtgggtggcaagcactttaccctctaagccatctccccagtccctgaggat 378
Query: 179 gacgcttctaagggttacccatgtgtcccgagggagcagaggtggctggggtgtcctggg 238
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gatgcttctaagggttacccatgtgtcccgagggagcagaggtggctggggtgtcctggg 438
Query: 239 taccagaggaagaggacagcaagggaacatataggaagggagaccaagtttggctcacac 298
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 439 taccagaggaagaggacggcaagggaacagataggaagggagaccaagtttggctcacac 498
Query: 299 tgttcttcctgtccggcttgcttgggatggtgatactcgctatgtggacaagatgtcgga 358
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgttctacctgtccggcttgcttgggatggtgatactcgctatgtggacaagatgtcgga 558
Query: 359 tatgttgacaggacacttggaaagaagatcttgactctgggccttaaactggctcctttc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tatgttgacaggacacttggaaagaagatcttgactctgggccttaaactggctcctttc 618
Query: 419 tatcaaatcattgctcacggccactgttcaccggtttcggagaccagtaatctctatctc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tatcaaatcattgctcacggccactgttcaccggtttcggagaccagtaatctctatctc 678
Query: 479 aacatccaggcagaaggctgtcaccgtggggttgaaggcttgaggttcaaagggggtgcc 538
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aacatccaggcagaaggctgttaccgtggggttgaaggcttgaggttcaaagggggtgcc 738
Query: 539 acaaagagatgatcaggg 556
||||||||||||||||||
Sbjct: 739 acaaagagatgatcaggg 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
