BAC Information

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BAC

Clone NameMSMg01-297F02
Chromosome4 (Build37)
Map Location 137,766,643 - 137,766,892
singlet/doubletsinglet
Overlap genenone
Upstream geneWnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2, Usp48, Rap1gap, Akp2, Ece1, LOC100040558, Eif4g3
Downstream geneHp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297F02.T7 (MSMg01no297_f02.b1)MSMg01-297F02.TJ (MSMg01no297_f02.g1)
ACCAG424685AG424686
length745942
length of high quality
(start - end)
250 (66 - 315)---
definitionCHROMAT_FILE: MSMg01no297_f02.b1 PHD_FILE: MSMg01no297_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:44 2005CHROMAT_FILE: MSMg01no297_f02.g1 PHD_FILE: MSMg01no297_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGCGCGGAATTCTTTTC
CCTTCTCGGGTGACGTAGACAATGCAGTGTGAAATGTTACCCTGGAGCTG
GGGAATCAGCACAGTGGCTAAAAATGCTCCACAAAACCAAGGACAGGAGC
TCAGATCCTCCCAGAACCCACATAAAAGCAAGGTGGTTGTGGAAGCTTGC
CTGTGATCCTGATCCCCAAGAGAGGGCATTCCCAAGGCAAGATGCTGAGC
TGTGGGGTCAGTGAGTGAATAGAGTGGGAATGGTTGAGTGCTGTGCACTG
TGCACTTGAACTAGCGAATTCAGTGATAGACAGCTGTAGTGCTAGCTGTT
CACAGGACCGCCTCTCTCTACCCCCATCCTTGGAATACAGGTTAGAGTTA
AAGTTAGGCAGGCATGGCATGGGGAGGAGGAAGGCCGCACACGTCTGCAA
TCCCAGCACTGGGAAGTGGAGGCAGAGGATCAGGTTATCCTCGGCAAAGC
AACGGGATGCTGTCTCAGAAGGAAGTAGGAAGACCGGGCATGATGACTGC
CACCTTTTATCCCCAGCACTCAGAAGGCAGATAGGCCTGGTCTGTCTACA
TAGATTCAGGACAGAGCTACATTGGCCCCTGGCTTGNAAAAAACAAAACA
AAACTAAACAGAAGTTAGCTGTGTGAAGGTGGCCCATGCCTTTAACCTGA
TTACTTGGAAAACAGATGCAGACAGGCCCTCTTGATTTTGAGGCC
TGTCTTTCCCTTTTCTCTTGTCTTTTTTCATCGTGGGGTCTCGGCTCGGG
CTGCCCCGCGCGTGGCGGCGTGGGCCGGGGCCCTTCGCGTTGCTCCGCGG
GGCTCCCCTCTTTGTCCTTTTTCTTTGTTCTTTCTTCCTCGCCTCTGTTT
CCTTGCGGGCGCGTGGGGTTTTGCGTGGGGCGGGGCTTGGTCGGTGTGTT
TGTCGGTTTGGTGTGTGTCCTGCTTGTGCGTTTGTCTTTGCGCTCTCCCT
TTCCTGCGCCCTCGTGCGGGGGCCCCCCTCCGCGGCCGCGGTTGGGGTTG
TGGTTGGCTGGGGGTGTGGCGGTGTTGCGTGGGGGCTCCTTCTTCCCCCG
TCCCTCCTTCTCTCGCGCTTTGTTGGTGGGGGCCGGGTTTTTTCCCCCCC
TTTGTGCCTCCGTCGTTCGGGGGTTCTTTTTTTGTTGTCCCGTGGGGGGG
GGGCGCCTCTTTGCCCTCCCCCCCCCTANTTTTNNNNNNNNNTTTGGGGT
TNGCCCGGTGCCCCGGTGTGTCCCGGGGGGGGGGGGTTCCNNNNNNNNNN
NGGTCAATCTCCTATTGNNNATGGGGTCATGGTTCGGGNCGNNCCNTGGT
TGGGNGCGGTTGCACCCNCAGGGTNNACACCTAAATAANNAGAGTTAGGG
TTCCGTNTCCACTCCCCGCGAACCCGTCGGTTGTTGGGTGCCCGCTCGTT
GCTTCGTTGTTTGCTGGTTGGTGGTCCGTTTGGCTTGGCGCTTGGCGGGT
GGTTTGGCCCGCCCGCTTTTTATTTTTTNCTCTCCCCGCTCCCCCGAGCT
CGGGGGCCGTGTATTGAACCCCGGGGGGCTCTGGGGTAGGGGGTCTTCTC
AACAACCATTTCTCCCCCTTTCTTTGGGAGTTTTTTTCGTGCGCGGNGGG
GGGGTTTCTTTTCTTCCCCCCTCCTTCTCCGTCCTTGTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_f02.b1 MSMg01no297_f02.b1 CHROMAT_FILE:
MSMg01no297_f02.b1 PHD_FILE: MSMg01no297_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:44 2005
         (250 letters)



>mm_chr4_137766443_137767092
          Length = 650

 Score =  484 bits (250), Expect = e-141
 Identities = 250/250 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagacaatgcagtgtgaaatgttaccctggagctggggaatcagcacagtggctaaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagacaatgcagtgtgaaatgttaccctggagctggggaatcagcacagtggctaaaaat 260

                                                                       
Query: 61  gctccacaaaaccaaggacaggagctcagatcctcccagaacccacataaaagcaaggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctccacaaaaccaaggacaggagctcagatcctcccagaacccacataaaagcaaggtg 320

                                                                       
Query: 121 gttgtggaagcttgcctgtgatcctgatccccaagagagggcattcccaaggcaagatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgtggaagcttgcctgtgatcctgatccccaagagagggcattcccaaggcaagatgc 380

                                                                       
Query: 181 tgagctgtggggtcagtgagtgaatagagtgggaatggttgagtgctgtgcactgtgcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagctgtggggtcagtgagtgaatagagtgggaatggttgagtgctgtgcactgtgcac 440

                     
Query: 241 ttgaactagc 250
           ||||||||||
Sbjct: 441 ttgaactagc 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)