BAC Information

Click to search

BAC

Clone NameMSMg01-297H21
Chromosome4 (Build37)
Map Location 87,694,519 - 87,695,218
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc24a2, Mllt3
Downstream geneBC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297H21.T7 (MSMg01no297_h21.b1)MSMg01-297H21.TJ (MSMg01no297_h21.g1)
ACCAG424805AG424806
length7641,174
length of high quality
(start - end)		703 (45 - 747)---
definitionCHROMAT_FILE: MSMg01no297_h21.b1 PHD_FILE: MSMg01no297_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:57 2005CHROMAT_FILE: MSMg01no297_h21.g1 PHD_FILE: MSMg01no297_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATAGCCACTATGCCTCAAGATCTCCGTACCAAGATCCAGATCAGAG
ACTTCTATCTCCAAGACTCCAGATAAGGGTCACTGGTGAGCCTTCCAATT
CTGGATTGTAGTTCATTCCAAATATAGTCAAGTTGACAACCAGGAATAGC
CACTACAGGGGCTGTACCTGATCAGTTCTCTATTTTGATTAATACGTTAG
ATTTTACATTAATTTGCCCTACTGCTCATGTTCCTTCCTATCATAATACA
TCTGATTTTACTAATATGAATGCATAGGCAGGCAATTAAGTATGCATAGG
CAGGCATAAATCAATAAACAAGAATCTCTAAAACCTTACTAGGGAAATGG
CTCTGTAGTTAAGAGTGTGCAATACTTTTGCAGAAGTCCCAAGTTTAGTT
CCCAGTACCCACAACTGGCTGTTAATTTCAGTTCAAGAGGAGCCCTGATG
CTTTTGACCTCCACAGGCACCCACATTTACAGACCCACATGCAGACACAC
ATACATACACACATACTTTTTAAGCTAAAATAAGTCTTTAAAAAGAAGTT
TACTAGAGAAACAAACTTTGCTTCAGTGCAATATACCCCACACCAAGTTC
AGATTAGCCCTTCTATTTTTCATATCTGATATGTCAGGAACATGCTGTCT
AAATTTGATTATTACTATGAGTAGGGAATCCCAGACTATTTTTGAAAGAC
GAAAATAGCTGTAG

AAATATTTTAGGTAGAGTGAAGACGGCCGTTGGCCCCCNTGTAAGTCTTT
TTGCGGAAGAAGAGAAGAGGGGCGGGAGGAAGNGTGGCCTTACGTGATCC
GACNGANNNNNNNGNAAGGATTTTCCCAAAAAAAGAGTGGGNTNGNNGAA
GAAAATATTGTGAGTATAAAAGGGATAGTGAAAGAGGTTTTTAGCACCGG
TTATAGGGGTGTTGTAAATGTTGATGTGCTGTGATTGTAGAAGGTATTGT
TATTATATGGGATGAGAGTTGGGGTTTAGTTAGTATTGTATGAAGATAGA
GAGTGTGATGGGTTTAGGTTAGAGAGAAGATGTAGCGGGGGTAAGAGTAT
AAGATGAGGTAAATTGTCGTTTAAGATGTGGAAATAATAAATGTATGGAG
AGTTGAGTTCGGTTATTATAAGGAGGTATGAGGGATGTAATGATATAAAT
ATATTGCAATATTTTTTTTTTTTTCGTTATACAGAAAAAGAGATGTATTT
AGGGGAGAGCTGAGAGGAGATTAATATGAATATTATGTAGTTCGGATGGA
CAAAAGGAAATGAAAAGTTATGGAGTGATAAATTGGAGAAATGTAGGGAG
AGGGAACCCCCACCATGTGGTATTATAAGAAAAATAAAAAGGGGGATATG
AAAATTACGGTGAGGATATAGAGGTTAGATATGAGTGGAGGATAATAATT
ATGTATTTATTGGAGATAAGTGAGAAGAATAGGAATGGATTAGTGCAGTG
GGATGGGAGATAATGGTAAAAATAATTAGTGCGTGGGTATATGAATTTGT
CGATGAAGAGAGGGTATTGTATGAGGGTTAGTGAGGGGGGTGGTATATCT
TTAAAATTGTAGTAAAGTAGATGTGTAGAGAGATGTGGTNATTGTTTGTT
AATGTGTATATGGTAAAGTGGTGGAAGTTGTGAGAGGGTAGAGTTACGTC
TATTGATAGATGTTTATCCGCGTTATAGGATGAGGTGGCAGAGGAGAAGA
TGTTATTTAGTTATATGGTGGGTTGGTTGTATAGAGGTATCATATATCAG
CGGGGAGGACATTATAGTGTGTAGTAAGGTAGAGAGAAATGCGGGTATGT
GAGAAATGGGGAGATAATAAGATGATAATGTATGGTAATTAGTTGTGGGT
TAATGATGAGAGGGGCGGTGATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_h21.b1 MSMg01no297_h21.b1 CHROMAT_FILE:
MSMg01no297_h21.b1 PHD_FILE: MSMg01no297_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:57 2005
         (703 letters)



>mm_chr4_87694316_87695418
          Length = 1103

 Score = 1323 bits (684), Expect = 0.0
 Identities = 696/700 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatagccactatgcctcaagatctccgtaccaagatccagatcagagacttcta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatagccactatgcctcaagatctccgtaccaagatccagatcagagacttcta 263

                                                                       
Query: 64  tctccaagactccagataagggtcactggtgagccttccaattctggattgtagttcatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctccaagactccagataagggtcactggtgagccttccaattctggattgtagttcatt 323

                                                                       
Query: 124 ccaaatatagtcaagttgacaaccaggaatagccactacaggggctgtacctgatcagtt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccaaatatagtcaagttgacaaccaggaatagccactacaggggctgtacctgatcagtt 383

                                                                       
Query: 184 ctctattttgattaatacgttagattttacattaatttgccctactgctcatgttccttc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctctattttgattaatacgttagattttacattaatttgccctactgctcatgttccttc 443

                                                                       
Query: 244 ctatcataatacatctgattttactaatatgaatgcataggcaggcaattaagtatgcat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctatcataatacatctgattttactaatatgaatgcataggcaggcaattaagtatgcat 503

                                                                       
Query: 304 aggcaggcataaatcaataaacaagaatctctaaaaccttactagggaaatggctctgta 363
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 504 aggcaggcataaatcaataaacaagtatctctaaaaccttactagggaaatggctctgta 563

                                                                       
Query: 364 gttaagagtgtgcaatacttttgcagaagtcccaagtttagttcccagtacccacaactg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gttaagagtgtgcaatacttttgcagaagtcccaagtttagttcccagtacccacaactg 623

                                                                       
Query: 424 gctgttaatttcagttcaagaggagccctgatgcttttgacctccacaggcacccacatt 483
           ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 624 gctgttaatttcagttcaagaggggccctgatgcttctgacctccacaggcacccacatt 683

                                                                       
Query: 484 tacagacccacatgcagacacacatacatacacacatactttttaagctaaaataagtct 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tacagacccacatgcagacacacatacatacacacatactttttaagctaaaataagtct 743

                                                                       
Query: 544 ttaaaaagaagtttactagagaaacaaactttgcttcagtgcaatataccccacaccaag 603
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttaaaaagaagtttactagaggaacaaactttgcttcagtgcaatataccccacaccaag 803

                                                                       
Query: 604 ttcagattagcccttctatttttcatatctgatatgtcaggaacatgctgtctaaatttg 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttcagattagcccttctatttttcatatctgatatgtcaggaacatgctgtctaaatttg 863

                                                   
Query: 664 attattactatgagtagggaatcccagactatttttgaaa 703
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 attattactatgagtagggaatcccagactatttttgaaa 903


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space:   757449
Effective search space used:   757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


| Home | SequenceCutter | Blast | Download |