Query= MSMg01no297_j18.b1 MSMg01no297_j18.b1 CHROMAT_FILE:
MSMg01no297_j18.b1 PHD_FILE: MSMg01no297_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:05 2005
(694 letters)
>mm_chr4_47312719_47313812
Length = 1094
Score = 986 bits (510), Expect = 0.0
Identities = 522/526 (99%), Gaps = 1/526 (0%)
Strand = Plus / Minus
Query: 169 aaggttctagaatatgtggaaagatgcccaacacaattactcactaggcaaactgagaaa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 aaggttctagaatatgtggaaagatgcccaacacaattactcactaggcaaactgagaaa 1035
Query: 229 ccacagtgagctagcacctcacagccatcaggactgagccagtgtaaccacaagtgctgg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 ccacagtgagctagcacctcacagccatcaggactgagccagtgtaaccacaagtgctgg 975
Query: 289 cgaagatgacttgtgagtaccttcaacattactggattgtacacttgaagtaggtgcatg 348
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 cgaagatgac-tgtgagtaccttcaacattactggattgtacacttgaagtaggtgcatg 916
Query: 349 ttataatatctgaactgtatccattttaaagaagatgggaggctccatccggccctctat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 ttataatatctgaactgtatccattttaaagaagatgggaggctccatccggccctctat 856
Query: 409 caaacaaatagactgacatgtcacccaatgtgctaccctgagcccaaaggcagaggcagc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 caaacaaatagactgacatgtcacccaatgtgctaccctgagcccaaaggcagaggcagc 796
Query: 469 aggaatgagacatcactcagtactaacctgcacccagaatggcaggaggtcctggtggcc 528
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 aggaatgagacatcattcagtactaacctgcacccagaatggcaggaggtcctggtggcc 736
Query: 529 cagggggtcccggtggtccaggaacaccaggtctcccaaagccaggtggcccaggcaggc 588
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 cagggggtcctggtggtccaggaacaccaggtctcccaaagccaggtggcccaggcaggc 676
Query: 589 ctggaattcctgggggtccctgaggccccacaacagcctctcctttctgtccctgttgag 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ctggaattcctgggggtccctgaggccccacaacagcctctcctttctgtccctgttgag 616
Query: 649 gcaagcacatagttatgaagaaatctctcctcttagcatgtttgtg 694
||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 615 gcaagcacatagttatggagaaatctctcctcttagcatgtttgtg 570
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_j18.g1 MSMg01no297_j18.g1 CHROMAT_FILE:
MSMg01no297_j18.g1 PHD_FILE: MSMg01no297_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:05 2005
(467 letters)
>mm_chr4_47119115_47119984
Length = 870
Score = 826 bits (427), Expect = 0.0
Identities = 459/471 (97%), Gaps = 5/471 (1%)
Strand = Plus / Plus
Query: 1 agtctctataaagggggtaatcataagtcctatggtataggatcgctcacggtgaggatt 60
||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 201 agtctctataaagggagtaataataagtcctatggtataggatcgctcacagtgaggatt 260
Query: 61 acgtgagacgaggctagggatgcatgttagtgcctggaaaatacttatgcctcgttaagt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 acgtgagacgaggctagggatgcatgttagtgcctggaaaatacttatgcctcgttaaat 320
Query: 121 gataatttctgtttgtatgaaatggtgtcagatttgtaaacttagctcttgtctaccata 180
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 gataacttctgtttgtatgaaatggtgtcagatttgtaaacttagctcatgtctaccata 380
Query: 181 ccaacactgatcaccaaccaaat--a--gactgacatcaacatcaggaccaaaaatcaaa 236
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 381 ccaacactgatcaccaaccaaatggactgactgacatcaacatcaggaccaaaaatcaaa 440
Query: 237 taccagattgcctatattatctgttggggattagacagttcccgagcagacagaagtaca 296
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 taccagattgcctatattatctgttgggaattagacagttcccgagcagacagaagtaca 500
Query: 297 gacagtgtgcactcccttagagtggagagtgttgagctgccactgaccttcctgtggtgg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacagtgtgcactcccttagagtggagagtgttgagctgccactgaccttcctgtggtgg 560
Query: 357 ccacatagagagcgaggaaggagccacgaggcctgggatgccattggcgtggcagctcca 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccacatagagagcgaggaaggagccacgaggcctgggatgccattggcgtggcagctcca 620
Query: 417 cttgccttctctttgcttaccagaactgattgtggggggagggggagggag 467
||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 cttgccttctctttgcttaccagaactgattgtgggggg-gggggagggag 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 870
Length adjustment: 10
Effective length of query: 457
Effective length of database: 860
Effective search space: 393020
Effective search space used: 393020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
