BAC Information

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BAC

Clone NameMSMg01-297J22
Chromosome4 (Build37)
Map Location 117,844,171 - 117,844,783
singlet/doubletsinglet
Overlap geneJmjd2a
Upstream geneKif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3
Downstream genePtprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297J22.T7 (MSMg01no297_j22.b1)MSMg01-297J22.TJ (MSMg01no297_j22.g1)
ACCAG424898AG424899
length725722
length of high quality
(start - end)		614 (70 - 683)230 (358 - 587)
definitionCHROMAT_FILE: MSMg01no297_j22.b1 PHD_FILE: MSMg01no297_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:06 2005CHROMAT_FILE: MSMg01no297_j22.g1 PHD_FILE: MSMg01no297_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXCTATTTTCCAAAAGTGGCGGAATT
CCTGGCATATTCATACAAATTCTCCCTCTGGAGGCCTTGGACAGGAGGAA
GCCTGGGGAAGGTCACAGGCACAGGTGTGAACCCCTTCTCCCTTAGGAAC
CCCGTACCCTCCCCTCTCTGGAGAGGTTACTGCACCCTGCAGGTCCTGGA
GTGACGTGGGAGGCCAGGCTTCCAAACACAAAAGCCAAAGATGCGAACCC
AGCCACACCCTGACACCAACCCCTCCGGGATGTAAGGGGTCGAGGCACGG
AGCAGGACCTGCGTCCCTCTTTTATGGCAAGGACGGGGCTCCACGCCCCT
CACACGTCAATGCCTCGTTCCCAGCATCCTCTCAGAGACTCACACTCAAC
AGATAATTAGTGGGGCTGAAAACAGTATTTGAAGAAAAATACTTAGCAAC
AACAGAAATTAGGGGCAAAAAAAGCTTTTTATATATCAGGGTGGTGGGTG
GCAATGGAGCTCATTTTAGTAATGGCTTGCATGAGGCCCTACATGCACAC
AAAAAAAGTAGATAAATAGTATTTTTTTTAAAAAGGATACCAGGGTGGAG
GGGATAATCTGTGTGATTTAACATAAAAATTATATAAAAAAGGAAAAGAG
TAAGTTGGGTCAGGGGTGGCCCACACCTTGAATCTNCACACTAGAGCAGC
AGAGGCAGTGGATTTCAGTGAGTTN

GGCGGACGCCTGGTTTTCCCACTCGGGTGAACTATAGAAGGATTGCAGCA
TTCACACCCCTTACCCCATAAAACCCCCTAGCTTTCGAGCCTCGTGGCCA
ACACCCGTTATCTCCTGTGTGGGATGCATGTCGGTCTGGAGCTCTGTAAT
TAAACGACCTCATGTAATTACATCGAGATGGTCCTTCGTGATTTTTTTGG
GCGCACGCTGAATCGGGAATGGAGTGGGGGTTTCCCCTCTAGGTCTATCA
GTTGATCTCAGAAGAGTATAACGGAGTCTTTATAAGTAAAGGGCCCTGCT
GACCCTGGCTTCTGCTCTATAGCTGGTTACTTATCTCACCTGTAATGCCT
CCTGCGCTTCTTGAAACAAATTTGAACAAATCTTTCATTTACAAAAACAC
AGATTTCAAAAATACATAGAATGTATTCCAAAAAAAGAAACAGGCTTAAA
TTCTTTTCTTTTTATGTGTGTGGGTGTCTTGCCTGCCTGTATGTCTGTGC
ACCACACTCGTGCAGTGCCAATGGGGCCAGAAGAGGGCATCGGATCTCCT
GGATCTAGCTGCCCTATAGGTGCTGTGAACTGAGACTTGGGTTCTGTGGA
AGAACAGGTAGCTCCAGTGGGGTTGTCTCCCGCACTCTTTATATTTCTAT
TATCTATGATATAGCGCTTTCTGAAAGGATATTCTATAAGGATCGTGTAC
ACCTCTGATTCCAAATACTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_j22.b1 MSMg01no297_j22.b1 CHROMAT_FILE:
MSMg01no297_j22.b1 PHD_FILE: MSMg01no297_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:06 2005
         (614 letters)



>mm_chr4_117843971_117844983
          Length = 1013

 Score = 1125 bits (582), Expect = 0.0
 Identities = 606/614 (98%), Gaps = 1/614 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctccctctggaggccttggacaggaggaagcctggggaaggtcacaggcacaggtgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctccctctggaggccttggacaggaggaagcctggggaaggtcacaggcacaggtgtg 260

                                                                       
Query: 61  aaccccttctcccttaggaaccccgtaccctcccctctctggagaggttactgcaccctg 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccccttctccctgaggaaccccgtaccctcccctctctggagaggttactgcaccctg 320

                                                                       
Query: 121 caggtcctggagtgacgtgggaggccaggcttccaaacacaaaagccaaagatgcgaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 caggtcctggagtgacgtgggaggccaggcttccaaacacaaaagccaaagattcgaacc 380

                                                                       
Query: 181 cagccacaccctgacaccaacccctccgggatgtaaggggtcgaggcacggagcaggacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagccacaccctgacaccaacccctccgggatgtaaggggtcgaggcacggagcaggacc 440

                                                                       
Query: 241 tgcgtccctcttttatggcaaggacggggctccacgcccctcacacgtcaatgcctcgtt 300
           ||||||||||  ||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 441 tgcgtccctcacttatggcaaggacggggctccacacccctcacacatcaatgcctcgtt 500

                                                                       
Query: 301 cccagcatcctctcagagactcacactcaacagataattagtggggctgaaaacagtatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccagcatcctctcagagactcacactcaacagataattagtggggctgaaaacagtatt 560

                                                                       
Query: 361 tgaagaaaaatacttagcaacaacagaaattaggggcaaaaaaagctttttatatatcag 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggagaaaaatacttagcaacaacagaaattaggggcaaaaaaagctttttatatatcag 620

                                                                       
Query: 421 ggtggtgggtggcaatggagctcattttagtaatggcttgcatgaggccctacatgcaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtggtgggtggcaatggagctcattttagtaatggcttgcatgaggccctacatgcaca 680

                                                                       
Query: 481 caaaaaaagtagataaatagtattttttttaaaaaggataccagggtggaggggataatc 540
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 caaaaaaagtagataaatagtattttttt-aaaaaggataccagggtggaggggataatc 739

                                                                       
Query: 541 tgtgtgatttaacataaaaattatataaaaaaggaaaagagtaagttgggtcaggggtgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgtgtgatttaacataaaaattatataaaaaaggaaaagagtaagttgggtcaggggtgg 799

                         
Query: 601 cccacaccttgaat 614
           ||||||||||||||
Sbjct: 800 cccacaccttgaat 813


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1013
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1003
Effective search space:   605812
Effective search space used:   605812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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