Query= MSMg01no297_l01.b1 MSMg01no297_l01.b1 CHROMAT_FILE:
MSMg01no297_l01.b1 PHD_FILE: MSMg01no297_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:11 2005
(559 letters)
>mm_chr4_59814937_59815895
Length = 959
Score = 978 bits (506), Expect = 0.0
Identities = 543/558 (97%), Gaps = 6/558 (1%)
Strand = Plus / Minus
Query: 5 gaattccaggacagttgcc---gctacatagtgagtccctgtctcgatttaaaacatata 61
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 812 gaattccaggaca---gccagggctacatagtgagtccctgtctcgatttaaaacatata 756
Query: 62 tgattaactcccacagtagagcatgtctttcagagtacccccagcccattttgttcctca 121
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 755 tgattaactcccacagtagagcatgtctttcagagtacccccaacccattttgttcctca 696
Query: 122 ggacatggccagacatactcgccccagaataaactatccgcctttgaagcaagacccagt 181
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 695 ggacatggccggacatactcgccccagaataaactatccacctttgaagcaagacccagt 636
Query: 182 cacatgggccctttcccatccacaaggagtggcaggcactaagcctgggacctatcagga 241
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 635 cgcatgggccctttcccatccacacggagtggcaggcactaagcctgggacctatcagga 576
Query: 242 gatagggccccaggccccacaatttagtattttgccaaagaagaaccatgtcacccttac 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gatagggccccaggccccacaatttagtattttgccaaagaagaaccatgtcacccttac 516
Query: 302 tggcaactctggcaggactgcatgagagtgctcagtaccgacaaggcattgtcccatctt 361
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tggcaactctgccaggactgcatgagagtgctcagtaccgacaaggcattgtcccatctt 456
Query: 362 ctcccttggtacagcacgcgcttaggcacactgcttggtgtttgtattagctgcttatcc 421
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ctcccttggtacagcaggtgcttaggcacactgcttggtgtttgtattagctgcttatcc 396
Query: 422 cccgctggcgtttaatacaatcatagctttattctatatggcatcccaaaccctgcctca 481
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tccgctggcgtttaatacaatcatagctttattctatatggcatcccaaaccctgcctca 336
Query: 482 aaataacgccaccacttctaaagtggatgactggtgaggacaaaggaggttttcagagga 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aaataacgccaccacttctaaagtggatgactggtgaggacaaaggaggttttcagagga 276
Query: 542 cattcagagtgacatgta 559
||||||||||||||||||
Sbjct: 275 cattcagagtgacatgta 258
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_l01.g1 MSMg01no297_l01.g1 CHROMAT_FILE:
MSMg01no297_l01.g1 PHD_FILE: MSMg01no297_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:11 2005
(442 letters)
>mm_chr4_59664064_59664905
Length = 842
Score = 801 bits (414), Expect = 0.0
Identities = 435/442 (98%)
Strand = Plus / Plus
Query: 1 actctgtagactaggctggcctcgaactcagaaatttgcctgcctctgcctcccaagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctgtagactaggctggcctcgaactcagaaatttgcctgcctctgcctcccaagtgc 260
Query: 61 tgggattaaaggcatgtgccaccacttctggcatcgaaattaatttaaccaaggtggtaa 120
||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct: 261 tgggattaaaggcatgtgccaccacgtccggcatcgaaattaatttaaccaaggtagtaa 320
Query: 121 aagacttgtacagtgaatattacaaaatattgccaaagtaaagaattcctaaataaatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagacttgtacagtgaatattacaaaatattgccaaagtaaagaattcctaaataaatgg 380
Query: 181 aaaaatgttctgtgctcatcagtgggaatgcaacattgttaacattccaggactctccaa 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatatgttctgtgctcatcagtgggaatgcaacattgttaacattccaggactctccaa 440
Query: 241 agctattcttatctgaactataacagagggtttaaatggaaaactacatctctgaattaa 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 agctattcttatctgaactataacagcgggtttaaatggaaaactacatctctgaattaa 500
Query: 301 tttggagttgcaagaggctctgaatggccaaaatagccttgaaagacaataataagacca 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 tttggagttgcaagaggctctgaatggccaaaatagccttgaaagagaataataagacca 560
Query: 361 gtgtggcggcacatgtctttaatctcagcactcaagagccagaggcaggtgaatctaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgtggcggcacatgtctttaatctcagcactcaagagccagaggcaggtgaatctaaaa 620
Query: 421 ttgacaggccataattacagta 442
|||||||||||||| |||||||
Sbjct: 621 ttgacaggccataagtacagta 642
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
