Query= MSMg01no298_a12.b1 MSMg01no298_a12.b1 CHROMAT_FILE:
MSMg01no298_a12.b1 PHD_FILE: MSMg01no298_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:37 2005
(505 letters)
>mm_chr4_12343716_12344620
Length = 905
Score = 632 bits (327), Expect = 0.0
Identities = 348/355 (98%), Gaps = 1/355 (0%)
Strand = Plus / Minus
Query: 4 ggaattcccatgttccttctaagtccaatgaatttgccactgaagattactcatcacgag 63
|||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 354 ggaattcccatggtgattctaagtccaatgaatttgccactgaagattactcatcccgag 295
Query: 64 caaagtctttgtacaattgtctcaaagctgagacaacaaatgtacttaggatgataagga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 caaagtctttgtacaattgtctcaaagctgagacaacaaatgtacttaggatgataagga 235
Query: 124 ttcagctcttaatcaggctgggctgggggcctgagatggctaatcctgtctgacaaattg 183
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 234 ttcagctcttaatcaggctgggctgggggcctgagatggctaatcctgtatgacaaattg 175
Query: 184 attggatctggagtcaactaaaaggccagctgctggcaacacatgtgaaaggttgcctta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 attggatctggagtcaactaaaaggccagctgctggcaacacatgtgaaaggttgcctta 115
Query: 244 accaaggaagacccacacttaatataagtgggtagcctagatagaaggaggtggaagaag 303
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 114 accaaggaagacccacacttaatataagtgggtagcccagata-aaggaggtggaagaag 56
Query: 304 gattcttaatttattgcatacttatatatactctcaatggcaaattcatccactc 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 gattcttaatttattgcatacttatatatactctcaatggcaaattcatccactc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_a12.g1 MSMg01no298_a12.g1 CHROMAT_FILE:
MSMg01no298_a12.g1 PHD_FILE: MSMg01no298_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:37 2005
(473 letters)
>mm_chr4_12188675_12189545
Length = 871
Score = 522 bits (270), Expect = e-152
Identities = 292/300 (97%), Gaps = 2/300 (0%)
Strand = Plus / Plus
Query: 1 attcagtctatttgaagacagagttaatagattcgtaaatgaaagaacgtatctttatta 60
|||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||
Sbjct: 201 attcagtctatttgaagacacagttaatagattcgtaaatcaaagaacatatctttatta 260
Query: 61 gtgtgtattcatagtgactgctctgttggatatgaggagggctcaagactaaacggtgat 120
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtgtattcatagtgactgct--gttggatatgaggagggctcaagactaaacggtgat 318
Query: 121 gcccttggtcctggatagcttggacagtgaagctgaaattgtagaagatgagcagccatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gcccttggtcctggatagcttggacagtgaagctgaaattgtagaagatgagcagccatt 378
Query: 181 caaagaaagagcacaaagaccttgcagggcaagaggagaaggagataagccttgaggggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 caaagaaagagcacaaagaccttgcagggcaagaggagaaggagataagccttgaggggg 438
Query: 241 tgtcttcattgtgtgaaggagcttggtattttcagggcagagtaataaactcattttctt 300
| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tatcttcaaggtgtgaaggagcttggtattttcagggcagagtaataaactcattttctt 498
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 871
Length adjustment: 10
Effective length of query: 463
Effective length of database: 861
Effective search space: 398643
Effective search space used: 398643
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
