BAC Information

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BAC

Clone NameMSMg01-298B04
Chromosome4 (Build37)
Map Location 34,264,412 - 34,264,792
singlet/doubletsinglet
Overlap genenone
Upstream geneAcy1l2, Srrp, Pnrc1, Rngtt, LOC100041919, LOC100041924, Cnr1, Spaca1
Downstream geneLOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298B04.T7 (MSMg01no298_b04.b1)MSMg01-298B04.TJ (MSMg01no298_b04.g1)
ACCAG425224AG425225
length742739
length of high quality
(start - end)
457 (74 - 530)382 (58 - 439)
definitionCHROMAT_FILE: MSMg01no298_b04.b1 PHD_FILE: MSMg01no298_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:40 2005CHROMAT_FILE: MSMg01no298_b04.g1 PHD_FILE: MSMg01no298_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCGCGGA
ATTCTGCTGTGTTTTCTCTGGACCTGAATGACTACTACCACTACCACTAG
TATTCCTCCTCCTCCTCCTCCTCCTCCTCTTTTGCTTCTCTTTTCTGTAA
GGATTTTATTACTATTTCAATCTCATTTATATGGGTCTGAGTCTGTTTTG
GCTGTTGATTTCTTGATTTAATTTTGGTGGCTTGGATAAGACTAGACATT
CAGCCATTTCTTTTTAGTGTTTTTTTTTTTTTCCAGCTTAATGGAGTACA
GAGTTTTTTTCCCCAGTATTCTCTTTTAATATTCTAACTTTCATTGGTGT
CTCTTGAAATGTTTCCATGTTAATTTCTCCTCTTGTTCCTCTCTTTCTTT
TGGTTAATTAGGCCAAGAGTCTGCCATTCTTATTTATTCTCTCAAAGAAC
CAATTCTGAGATCTGTTGTTTTTTTTTTTCCCTATTGTTTTGTTTTTCCC
AGTTCATTGACTTCTGCTCTGATTTTTATTATATTTCGCCTTCTATTGCC
TTTGGATTGGACTTGTTGTTGGTTATTCAAATTTTTTAGTTGCATTATAT
ACCCACATGTGTGCCTTTTTAAAATGTTTTACCTTAGGCATGCAGAGCTC
TAATCTTCCTGGAAATCGTCTGCTTCCTTTATGTCCCACACATCTTGCAT
TGTTTTTTCCATTTAACTCCCGAACATTCCTATATTTTTCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXACTTCCCAGAAGCTGTAGGAGTCATCTTCAAACCAGCAAGGAA
CAGGGGAAATCTAAAGTCAGCCTGTTGTAAGAGCTTTTAGAGAGACATTT
ATTTAGACTGAACATGATCATGTGAACAAAATCCTGTTACTTCCACCATT
TTCTGTAAGTAGAAGCAAATCGTGACCCCTCCCCCCCTTCCCACAATGGC
AAGAGGGAATGAGAGCAAAGAGCATGAATGCCATGGGGCAGGAATCAGGA
TTGGGTAATCTTATGTTGGATGGGTCAGGGAGCAAAAGAGAAAAAACAGC
TGGAATGGATTCCTTAGGAAACTTAAATCTCAGTAGCAGAGATTAAAATA
ATTTTAACATGAGACATGGTGTAGCATCTTCTATCAAAGTCCGACAAACA
TACTGTGAGAGTTTACAAATGAAGGAGAATCCTGCAAATTTTTTTAAAGA
GTGCCATTTGATTTGAGATTTTAGCGCCTGTTGATCCTGCTACCTTTATT
GTTTACTAGGCAAGCACTTGTGAAGTGCAGACTCTATTCTAAGCCAGATG
TTGTGTACATGGGAATCCTTATAGTTCTCTCTCCTAACTATTTCCTTTTT
AAAAAAATGAACTTTTATATGGTTTTACTCTCACTTTACGATTTTTTACT
TCACCCATTTGACTTTTGTGATTGAAAAACATATTGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_b04.g1 MSMg01no298_b04.g1 CHROMAT_FILE:
MSMg01no298_b04.g1 PHD_FILE: MSMg01no298_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:40 2005
         (382 letters)



>mm_chr4_34264212_34264993
          Length = 782

 Score =  723 bits (374), Expect = 0.0
 Identities = 380/382 (99%), Gaps = 1/382 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttcccagaagctgtaggagtcatcttcaaaccagcaaggaacaggggaaatctaaagt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 acttcccagaagctgtaggagtcatcttcaaaccagcaaggaacagggaaaatctaaagt 260

                                                                       
Query: 61  cagcctgttgtaagagcttttagagagacatttatttagactgaacatgatcatgtgaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcctgttgtaagagcttttagagagacatttatttagactgaacatgatcatgtgaac 320

                                                                       
Query: 121 aaaatcctgttacttccaccattttctgtaagtagaagcaaatcgtgacccctccccccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 aaaatcctgttacttccaccattttctgtaagtagaagcaaatcgtgacccct-cccccc 379

                                                                       
Query: 181 ttcccacaatggcaagagggaatgagagcaaagagcatgaatgccatggggcaggaatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttcccacaatggcaagagggaatgagagcaaagagcatgaatgccatggggcaggaatca 439

                                                                       
Query: 241 ggattgggtaatcttatgttggatgggtcagggagcaaaagagaaaaaacagctggaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggattgggtaatcttatgttggatgggtcagggagcaaaagagaaaaaacagctggaatg 499

                                                                       
Query: 301 gattccttaggaaacttaaatctcagtagcagagattaaaataattttaacatgagacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gattccttaggaaacttaaatctcagtagcagagattaaaataattttaacatgagacat 559

                                 
Query: 361 ggtgtagcatcttctatcaaag 382
           ||||||||||||||||||||||
Sbjct: 560 ggtgtagcatcttctatcaaag 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)