Query= MSMg01no298_c15.b1 MSMg01no298_c15.b1 CHROMAT_FILE:
MSMg01no298_c15.b1 PHD_FILE: MSMg01no298_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:47 2005
(698 letters)
>mm_chr4_94451214_94452311
Length = 1098
Score = 1000 bits (517), Expect = 0.0
Identities = 550/561 (98%)
Strand = Plus / Minus
Query: 3 ggaattcctctgattttcattgaagaacctgtcctgaccagaacacctagacagaccaca 62
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaattcctctgactttaattgaagaacctgtcctgaccagaacacctagacagaccaca 502
Query: 63 gctgtcttccggtctcacatctccactcttctgctctggttcctgtcagggccttcagta 122
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 gctgtcttccggtctcacgtctccactcttctgctctggttcctgtcggggccttcagta 442
Query: 123 gaaaccttgtgcctttaaagccagtgctcagactgaagagagaactgtcaacactgaggc 182
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 gaaaccttgtgcctttaaagccagtgctcagactgaagagagaactgttaacactgaggc 382
Query: 183 tgctatacaaaggtctctgtaggagccatgatcacagtttctgaactagggaccatgcca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctatacaaaggtctctgtaggagccatgatcacagtttctgaactagggaccatgcca 322
Query: 243 tcccatttctactgtttataagcagcttatgttgaattaagttactttatacaagtatta 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 tcccatttctactgtttataagcagcttatgttgaattaagttactttatacaagcatta 262
Query: 303 tataaatcagtgtgctcctgggatcaagcttcatatatgcatagagacagacaggtatgt 362
|||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tataaagcagtgtgctcctggggtcaagcttcatatatgcataaagacagacaggtatgt 202
Query: 363 acatatgtaatcttattgaaaatttaacataacaatgtaggtattattatacccattcca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatatgtaatcttattgaaaatttaacataacaatgtaggtattattatacccattcca 142
Query: 423 cagatagggagaaatgagaccaacagaagttaactaacttgcttcaagctgtacagccgg 482
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 141 cagatagggagaaatgagaccaacagacgttaactaacttgcttcaagctgtacagctgg 82
Query: 483 tgaatgataaagaattcaaatctggaggatataagtgtaaaagctaccccatcttaacta 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 tgaatgataaagaattcaaatctggaggatataagtgtaaaagctaccccatcttaacta 22
Query: 543 ttgctcaccatccaaacctgc 563
|||||||||||||||||||||
Sbjct: 21 ttgctcaccatccaaacctgc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space: 748544
Effective search space used: 748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_c15.g1 MSMg01no298_c15.g1 CHROMAT_FILE:
MSMg01no298_c15.g1 PHD_FILE: MSMg01no298_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:47 2005
(281 letters)
>mm_chr4_94387246_94387927
Length = 682
Score = 522 bits (270), Expect = e-153
Identities = 279/282 (98%), Gaps = 1/282 (0%)
Strand = Plus / Plus
Query: 1 ttgcacacttttcctttcaaattctctggcttcgtttagctgggtctttgtcttgtgcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcacacttttcctttcaaattctctggcttcgtttagctgggtctttgtcttgtgcgg 260
Query: 61 cacaccagcacattccaaagcatcttcagccttttggcagtggtgagccaaggagggcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacaccagcacattccaaagcatcttcagccttttggcagtggtgagccaaggagggcca 320
Query: 121 ggctctaaggatgaaggtccagatgatactgactggaccttaggtatgcctggatgtgcc 180
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 321 ggctctaaggatgaaggtccagatgatgctgactggaccttaggtatgcctggatgcgcc 380
Query: 181 agagttaattgccctttt-aaacatttacggtgcatctttgtaagaggcaagctaaaata 239
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagttaattgccctttttaaacatttacggtgcatctttgtaagaggcaagctaaaata 440
Query: 240 tgatttgtggggcatagtggaacaggcctagggacgctgaga 281
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatttgtggggcatagtggaacaggcctagggacgctgaga 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 682
Length adjustment: 9
Effective length of query: 272
Effective length of database: 673
Effective search space: 183056
Effective search space used: 183056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
