BAC Information

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BAC

Clone NameMSMg01-298C17
Chromosome4 (Build37)
Map Location 94,387,579 - 94,387,704
singlet/doubletsinglet
Overlap genenone
Upstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74
Downstream geneTek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun, LOC100042411, 2310009E04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298C17.T7 (MSMg01no298_c17.b1)MSMg01-298C17.TJ (MSMg01no298_c17.g1)
ACCAG425297AG425298
length640759
length of high quality
(start - end)
76 (69 - 144)126 (511 - 636)
definitionCHROMAT_FILE: MSMg01no298_c17.b1 PHD_FILE: MSMg01no298_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:47 2005CHROMAT_FILE: MSMg01no298_c17.g1 PHD_FILE: MSMg01no298_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXNATGCGAGAGATCCGCGGAA
TTCCTCTGACTTTCATGAAGAACCTGTCCTGACCAAAACACCTAGACAGA
CCACAGCTGTCTTCCGGTCTCACATCTCCACTCTTCTGCTCTGGTTCCTG
TCAGGGCCTTCAGTAGAAACCTTGTCGCCTTTGAAGCCAGTGCTCAGACT
GAAAGAGAGACTGTCACCTGAGCTGCTATCAAGGTCCTGGAAGGAACCAA
GATACAGGTTTTTGGGAAAAAAAAGAAAAAAGGGGGCCCCCCCCCCTTNT
TTTTTTGGTTATAAAAAACTTGTTGTTTTTTTAACTCTTTTCCAAAAAAA
TTTTATAAAAAAAAGGGGGTTGGGGGGGGGAACCCCTTTTTTTTTTTTTT
TTAAAAACGGGGGAGGGGGGGTGGTTATTTTAACCCCCCCCTTTTGTGGT
GAAAAAAAAAACAAAAAGGGGGGGGGGAGGTTTTTTTTTTCTTCCCCCCC
CCCCCCCGGGGGGAAAGGGGAAAAAAACCCCACCACCCCCCTTTTTTTTT
TTTTTTTTTTTTCTCCCCCGCGGGGGGGGGAAAAGAAAAAAAAAACCCAC
CTCCTCCGCGGTATGAAATAATTACCCCCCCCCCCCCCTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCTTTTGTAGAGGATGTCACTCAC
ACACAACAGACACATGGTAATAGTGACAATAAACAGTGGTAAGGAAGTTT
CAAACAAAGAAGCATTCCATTGAAAGGCATCCTCTTTTTTAATTGCTGTG
ACTAGGAAGTGAAGTTAGACAGGGGGATGGGGCCAGGGCAGGGGACTTGA
GGAAGAAAGATTACAGAAATAGAAAAGTTCCCAAGTTCACTTTCATCTAG
AGCTGACTTTCCCTCTATGAGAATGCTGTCCCGTAACAGGATGTCGGAGC
GTTTTGGTAAGACGCAGTCACTAGCCATTGCACACTTTTCCTTTCAAATT
CTCTGGCTTCGTTTAGCTGGGCCTTTGTCTTGTGCGGCACACCAGCACAT
TCCAAAGCATCTTCAGCCTTTTGGCAGTGGTGAGCCAAGGAGGGCCAGGC
TCTAAGGATGAAGGTCCAGATGATACTGACTGGACCTTAGGTATGCCTGG
ATGTGCCAGAGTTAATTGCCCTTTTAAACATTTACGGTGCATCTTTGTAA
GAGGCAAGCTAAAATATGATTTGTGGGGCATAGTGAAACAGGCCTAGGGA
CGCTGAGACTTGAAAACACAAGTTCAAGGCTAGGTTAATCTACATAGAAT
TTCAGACATTTTTGTCTCAGAAAATAAGACCAGACACCAGTCATAAAATG
CCATAGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_c17.g1 MSMg01no298_c17.g1 CHROMAT_FILE:
MSMg01no298_c17.g1 PHD_FILE: MSMg01no298_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:47 2005
         (126 letters)



>mm_chr4_94387379_94387905
          Length = 527

 Score =  221 bits (114), Expect = 2e-62
 Identities = 123/126 (97%), Gaps = 1/126 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggtccagatgatactgactggaccttaggtatgcctggatgtgccagagttaattgcc 60
           |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 aaggtccagatgatgctgactggaccttaggtatgcctggatgcgccagagttaattgcc 260

                                                                       
Query: 61  ctttt-aaacatttacggtgcatctttgtaagaggcaagctaaaatatgatttgtggggc 119
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttttaaacatttacggtgcatctttgtaagaggcaagctaaaatatgatttgtggggc 320

                 
Query: 120 atagtg 125
           ||||||
Sbjct: 321 atagtg 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 126
Length of database: 527
Length adjustment: 8
Effective length of query: 118
Effective length of database: 519
Effective search space:    61242
Effective search space used:    61242
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)