Query= MSMg01no298_d18.b1 MSMg01no298_d18.b1 CHROMAT_FILE:
MSMg01no298_d18.b1 PHD_FILE: MSMg01no298_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:52 2005
(689 letters)
>mm_chr4_137837478_137838566
Length = 1089
Score = 924 bits (478), Expect = 0.0
Identities = 481/482 (99%)
Strand = Plus / Minus
Query: 208 tctttgatttgttttgtattgttggtgtttgttcttcattttgtttttgtttgtttttgt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1089 tctttgatttgttttgtattgttggtgtttgttcttcattttgtttttgtttgtttttgt 1030
Query: 268 tgttcaatatagcgtttctctgtgtagccttggctgtcttagaactcactctgtatacct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1029 tgttcaatatagcgtttctctgtgtagccttggctgtcttagaactcactctgtagacct 970
Query: 328 ggctagccttgaactcagagatctgcctacctctgcctctgtagtgctgggactgcaagt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 ggctagccttgaactcagagatctgcctacctctgcctctgtagtgctgggactgcaagt 910
Query: 388 atgtgccaccactgcttggccaagggtctgtctcttcttactgccacctccactaagggc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 atgtgccaccactgcttggccaagggtctgtctcttcttactgccacctccactaagggc 850
Query: 448 aaggtttgggtcctagaggcggacttggtacccagacctaccctagacggtcccaaaggg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 aaggtttgggtcctagaggcggacttggtacccagacctaccctagacggtcccaaaggg 790
Query: 508 cagagctctcaggactgcagccaccaaagcaggctctttgtccaacatcctgacaagagt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 cagagctctcaggactgcagccaccaaagcaggctctttgtccaacatcctgacaagagt 730
Query: 568 ttcgaggtctggcccctaattgagattataactgagaggcaagggatccagctgtaggct 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ttcgaggtctggcccctaattgagattataactgagaggcaagggatccagctgtaggct 670
Query: 628 tgggagccaggctagagctccccaaaactgctcctgcctagtgtcagcattctcctcagg 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tgggagccaggctagagctccccaaaactgctcctgcctagtgtcagcattctcctcagg 610
Query: 688 aa 689
||
Sbjct: 609 aa 608
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_d18.g1 MSMg01no298_d18.g1 CHROMAT_FILE:
MSMg01no298_d18.g1 PHD_FILE: MSMg01no298_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:52 2005
(668 letters)
>mm_chr4_137766419_137767486
Length = 1068
Score = 1270 bits (657), Expect = 0.0
Identities = 666/669 (99%), Gaps = 1/669 (0%)
Strand = Plus / Plus
Query: 1 attcttttcccttccagggtgacgtagacaatgcagtgtgaaatgttaccctgcagctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 attcttttcccttccagggtgacgtagacaatgcagtgtgaaatgttaccctggagctgg 260
Query: 61 ggaatcagcacagtggctaaaaatgctccacaaaaccaaggacaggagctcagatcctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaatcagcacagtggctaaaaatgctccacaaaaccaaggacaggagctcagatcctcc 320
Query: 121 cagaacccacataaaagcaaggtggttgtggaagcttgcctgtgatcctgatccccaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaacccacataaaagcaaggtggttgtggaagcttgcctgtgatcctgatccccaaga 380
Query: 181 gagggcattcccaaggcaagatgctgagctgtggggtcagtgagtgaatagagtgggaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagggcattcccaaggcaagatgctgagctgtggggtcagtgagtgaatagagtgggaat 440
Query: 241 ggttgagtgctgtgtactgtgcacttgaactagcgaagccagtgatagacagctgtagtg 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggttgagtgctgtgcactgtgcacttgaactagcgaagccagtgatagacagctgtagtg 500
Query: 301 ctagctgttcacaggaccgcctctctctacccccatccttggaatacaggttagagttaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctagctgttcacaggaccgcctctctctacccccatccttggaatacaggttagagttaa 560
Query: 361 agttaggcaggcatggcatggggaggaggaaggccgcacacgtctgcaatcccagcactg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agttaggcaggcatggcatggggaggaggaaggccgcacacgtctgcaatcccagcactg 620
Query: 421 ggaagtggaggcagaggatcaggttatcctcggcaaagcaacgggatgctgtctcagaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaagtggaggcagaggatcaggttatcctcggcaaagcaacgggatgctgtctcagaag 680
Query: 481 gaagtaggaagaccgggcatgatgactgccaccttttatcccagcactcagaaggcagat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaagtaggaagaccgggcatgatgactgccaccttttatcccagcactcagaaggcagat 740
Query: 541 aggcctggtctgtctacatagattcaggacagagctacattggccctgtcttggaaaaa- 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aggcctggtctgtctacatagattcaggacagagctacattggccctgtcttggaaaaaa 800
Query: 600 caaaacaaaacaaaacagaagttagctgggtgatggtggtccatgcctttaatctgatta 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 caaaacaaaacaaaacagaagttagctgggtgatggtggtccatgcctttaatctgatta 860
Query: 660 cttggaaaa 668
|||||||||
Sbjct: 861 cttggaaaa 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
