BAC Information

Click to search

BAC

Clone NameMSMg01-298F24
Chromosome4 (Build37)
Map Location 105,870,332 - 106,025,239
singlet/doubletdoublet
Overlap geneUsp24
Upstream genePpap2b, LOC433742, LOC665518, LOC434381, Ppia-ps4_954.1, Map1lc3, LOC384039
Downstream geneLOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298F24.T7 (MSMg01no298_f24.b1)MSMg01-298F24.TJ (MSMg01no298_f24.g1)
ACCAG425442AG425443
length748747
length of high quality
(start - end)		522 (75 - 596)637 (75 - 711)
definitionCHROMAT_FILE: MSMg01no298_f24.b1 PHD_FILE: MSMg01no298_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:03 2005CHROMAT_FILE: MSMg01no298_f24.g1 PHD_FILE: MSMg01no298_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,024,832 - 106,025,239)(105,870,332 - 105,870,967)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGTGATCCGCGGNA
ATCTTTTTTAAATTTCAACAAAAAGAATTTGAGCAAAGAATAAAGCTAAC
ATTTCTCTTTGCAACTGTGTTCTCCAAGACTGAACTTTGAAGACCTGAAT
GCAATTCTAATGTGAACTGCAAGATGTGTTAAGGTGAACTGTAAAAGACG
AGCTAACCCAAACCTTGATGTTCAGCTGTATATCACATACTCAGAGAATG
AACTATACAACATTCCTCCTCAGTGAAACACTCTTATTTGTGGTGGCTTG
AATGAGAACTATCCTCCATAATTTCTTGTTATTTGTGGCATTGTCTGGAG
AGGCTATGGAACTTTATGAGGTGCAGCCTTCTAGAAGGTATATCTGCGGA
AGCAGGTTTTGAAGTTTATGGCCTTATCTTACCTTCCTGTGCTGCTCTCT
AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCATTAAAT
GTAATCGCCTGCTTCTGCCTCCTGCTGCCATGCCGTATATACTCTGGCCC
TGGATCTGTGAACCAAAATTAACTTTGTTTACACCGCTTTTCGTCATGGC
ATTTCATCACAGCAACAGAAAGATAACTAATACTTGAATATTCTCTATAG
GTGTCATTTGTTTAATATACCCAACTACCAGAAGTCCCATTGCAAACTGG
GAATTATATATCAAAGCCAAATTAATAAAAGTGCCCGCATATCTTATT

CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTGCCAAAATCCCTTTGCCCAGCACAAGTGATGCTAA
TCTCTGTCAACAGAGGACCGTTTATACATTGTACTTGGGAGCGAGTGTAT
ATATGTGTGAGTGTGTGTGATACATGTGCACGTGTGTACAGGGGGCACAC
ACGCCCATGTGTATGTGCAGACAGCAGATGAGGGTGTCCAAGGTCTTGCT
CTATCGCTCCTTATCACTGAGTCAGAGGTGGTGATAAGGGCTGGGTGTAC
ATGCGTTCATTTCAACAATCATGCCTTTATTCTTCATCCCTTCTACATCT
GGAAAGACTGAGGATTTATTAACTTGCCCAAGATCACCAACAGGAAAGCA
ACATGGCACTATGTAACCATGCGACTCCCAAGCCCATGGGCAGCAGGGAC
ATCTGCCTTCGTCATTTCCCATGCCCCTTGCTGGCCCCACCCCTGACTGT
CTGTGTGACTATAGGAAAGCTCTTTAATCTCTCTAGCCTTGTGAAATGAA
GAGAGCACATCTGTTTGGCAGGACTGCTGTAAAGATGACAAAGGCTTTAC
CTAAAGCACTTAGCACATTGCCTGGCCCCCAAGAGGTTGTTAATAAATGT
CTCCTCTTTGTCTTCCTATAAAATTATGGTGGTACCTTCAAAGGCCAAAA
CGAGTCCACAGGTAACAGCACAAGCCAGGACACCAGGTTTGGCAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_f24.b1 MSMg01no298_f24.b1 CHROMAT_FILE:
MSMg01no298_f24.b1 PHD_FILE: MSMg01no298_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:03 2005
         (522 letters)



>mm_chr4_106024826_106025747
          Length = 922

 Score =  706 bits (365), Expect = 0.0
 Identities = 398/409 (97%), Gaps = 2/409 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaatttgagcaaagaataaagctaacatttctctttgcaactgtgttctccaagactgaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| 
Sbjct: 414 gaatttgagcaaagaataaagctaacatttctctttgcaactgtgttctgtaagactgat 355

                                                                       
Query: 61  ctttgaagacctgaatgcaattctaatgtgaactgcaagatgtgttaaggtgaactgtaa 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctctgaagacctgaatgcaattctaatgtgaactgcaagatgtgttaaggtgaactgtaa 295

                                                                       
Query: 121 aagacgagctaacccaaaccttgatgttcagctgtatatcacatactcagagaatgaact 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 294 aagacgagctaacccaaaccttgatgttcagctgtatatcacatacacagagaatgaact 235

                                                                       
Query: 181 atacaacattcctcctcagtgaaacactcttatttgtggtggcttgaatgagaactatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 atacaacattcctcctcagtgaaacactcttatttgtggtggcttgaatgagaactatcc 175

                                                                       
Query: 241 tccataatttcttgttatttgtggcattgtctggagaggctatggaactttatgaggtgc 300
           ||||||| ||| ||  |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 174 tccataagttcatgg-atttgtggcattgtctggagaggctatggaactttaggaggtgc 116

                                                                       
Query: 301 agccttctagaaggtatatctgcggaagcaggttttgaagtttatggccttatcttacct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 agccttctagaaggtatatctgcggaagcaggttttgaagtttatggccttatcttacct 56

                                                            
Query: 361 tcctgtgct-gctctctagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 408
           ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 55  tcctgtgcttgctctctagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 7


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no298_f24.g1 MSMg01no298_f24.g1 CHROMAT_FILE:
MSMg01no298_f24.g1 PHD_FILE: MSMg01no298_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:03 2005
         (637 letters)



>mm_chr4_105870132_105871168
          Length = 1037

 Score = 1139 bits (589), Expect = 0.0
 Identities = 625/639 (97%), Gaps = 5/639 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctttgcccagcacaagtgatgctaatctctgtcaacagaggaccgtttatacattgtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctttgcccagcacaagtgatgctaatctctgtcaacagaggaccgtttatacattgtac 260

                                                                       
Query: 61  ttgggagcgagtgtatatatgtgtgagtgtgtgtgatacatgtgcacgtgtgtacagggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgggagcgagtgtatatatgtgtgagtgtgtgtgatacatgtgcacgtgtgtacagggg 320

                                                                       
Query: 121 gcacacacgcccatgtgtatgtgcagacagcagatgagggtgtccaaggtcttgctctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacacacgcccatgtgtatgtgcagacagcagatgagggtgtccaaggtcttgctctat 380

                                                                       
Query: 181 cgctccttatcactgagtcagaggtggtgataagggctgggtgtacatgcgttcatttca 240
           |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 381 cgctccttatcactgagtcagaggtggtgataagtgctgggtgtacattcgttcatttca 440

                                                                       
Query: 241 acaatcatgcc--tttattcttcatcccttctacatctggaaagactgaggatttattaa 298
           |||||||||||     | || ||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 acaatcatgccag---agtcatcatcccttctacatctggaaagactgaggatttagtaa 497

                                                                       
Query: 299 cttgcccaagatcaccaacaggaaagcaacatggcactatgtaaccatgcgactcccaag 358
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 498 cttgcccaagatcaccaacaggaaagcaacatggcactatgcaaccatgcgactcccaag 557

                                                                       
Query: 359 cccatgggcagcagggacatctgccttcgtcatttcccatgccccttgctggccccaccc 418
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cccatgggcagcagggacgtctgccttcgtcatttcccatgccccttgctggccccaccc 617

                                                                       
Query: 419 ctgactgtctgtgtgactataggaaagctctttaatctctctagccttgtgaaatgaaga 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctgactgtctgtgtgactataggaaagctctttaatctctctagccttgtgaaatgaaga 677

                                                                       
Query: 479 gagcacatctgtttggcaggactgctgtaaagatgacaaaggctttacctaaagcactta 538
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 678 gagcacatctgtttggcaggaccgctgtaaagatgacaaaggctttacctaaagcactta 737

                                                                       
Query: 539 gcacattgcctggcccccaagaggttgttaataaatgtctcctctttgtcttcctataaa 598
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 738 gcacattgcctggcccccaagaggtcgttaataaatgtctcctctttgtcttcctataaa 797

                                                  
Query: 599 attatggtggtaccttcaaaggccaaaacgagtccacag 637
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 798 attatggtggtaccttcaaaggccaaaacgagtccacag 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |