BAC Information

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BAC

Clone NameMSMg01-298L09
Chromosome4 (Build37)
Map Location 54,300,719 - 54,301,277
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041197, Slc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
Downstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462, LOC670211
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298L09.T7 (MSMg01no298_l09.b1)MSMg01-298L09.TJ (MSMg01no298_l09.g1)
ACCAG425690AG425691
length730721
length of high quality
(start - end)
576 (56 - 631)559 (54 - 612)
definitionCHROMAT_FILE: MSMg01no298_l09.b1 PHD_FILE: MSMg01no298_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:27 2005CHROMAT_FILE: MSMg01no298_l09.g1 PHD_FILE: MSMg01no298_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTAAACGACTCACTTCAAAAAGAGGATCCGCGGAATTCAGTAT
TGCTCCTGGTATTACACTATCTCTTTGAGTAAAAGTTAGGTCACTGCCCT
TCACAGGAATCTACCATCACCTAGGAAGAAAGAAGTTTCTGACCGTAGGG
GAAACCAGAATAGATGCTTAGGATTATAGCTGAGTTACACCTATTTACAG
GAATTTACAATGGTTTAGGAAGCAGATCAGGCTGTGGTTTTAGAGTATTG
CATTATTCATGAGATGGTTAGCTAGAACGGAAATCCCTAGTTAGAACCAT
GACTTGTGTGTGAAAGCCCTTGCCCTAGGAGTGAAAATTTCTCACACCTG
GCTTCTAAGACTATAGCTGACCTTAGATAGGGCTGACTCTGTCTCAGTTA
TTTTATTGCCCAGTTCCTGCCAGTCTTTGCGTTTTCATTCCTCTGTTCTG
TGTAAGAGTCATTTAGCATCCGGTTACCTCATTTGTACCTTGCGGGTATG
TCACCCAACTTCCTTATTGTCTTCTGCATAAAAAGTCTGATGTTCGATTT
GAAAAATTACACTCAGATTCCACACGAACTCTCCTGTGTGTGTCTGTTTG
TCACTCATCCACACTTTGCCCACCCATGTCGAGAGACCCTGTTCCACACA
GACACAGGGACCCAGAGGGTCTGCGGCAGACTGTCTTATAATATTCCCAT
TTCTTCCTATGTTGCTCTCAGTCTTGGTGA
TGGAGGCCGCCTTTTCAAAGAAGGTTAGGTGACACTATAGAATGACACAA
GGAATTCCTGGATATCATCAACATCCCACTGCTCTGTGGCTTTCATTATT
TCCCAGGAGAAATAAGCAACCCCAGTGTGTAGTACTAGGCCTCTGAACTT
ACTGGCTCTTTCTTTCTAGAAGTTTCTAGGATTTTTTAATCACTTGGTTT
CAGAATTCAGTGTAATTTCTTATGATATTGAGCACGTGCAAACACACACA
CACACACACACACACACTGCTCAGAATTCCTTGAATTTCTTGTATTTGTA
TATTGAGTATTTTTCTTAATTTGAAATATTTTATACCACTGTTTTGGATA
TTTTTTATTTGTTTCCTCCTCTTTTACTTATTTTTAGAATCTTAATTCTA
AGGAACCAATACTTCCTTTTTTCCATTTAATTATCTCCCTGTCTTTTTCT
TAATTTTTCTATTCATCTACTTTTAGTTCATTTCTCCCCATTATTTTTTG
TACTTTCAGTTAAACTTTTCATTTAATTTTACTATTCCTTTGCTGGTACC
TCTGTATAAGGTCTAACTGTGAAGTTTCCCCCATAGGCCTATGTATTCAA
ATATGTTATCCAGTTGGTGGCATTGTTTCTGGAGGCTATGGAGTCAGGGA
TTTATGAAGTGGTTCATTACGGCCGGTATTTAGTGCTATAGATCAGCTCT
GCTTCTAGCTCATTTAATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_l09.g1 MSMg01no298_l09.g1 CHROMAT_FILE:
MSMg01no298_l09.g1 PHD_FILE: MSMg01no298_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:27 2005
         (559 letters)



>mm_chr4_54300519_54301477
          Length = 959

 Score = 1050 bits (543), Expect = 0.0
 Identities = 555/559 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcctggatatcatcaacatcccactgctctgtggctttcattatttcccaggagaaat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 attcctggatatcatcaacatcccactgctctgtggctttcattatttctgaggagaaat 260

                                                                       
Query: 61  aagcaaccccagtgtgtagtactaggcctctgaacttactggctctttctttctagaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcaaccccagtgtgtagtactaggcctctgaacttactggctctttctttctagaagt 320

                                                                       
Query: 121 ttctaggattttttaatcacttggtttcagaattcagtgtaatttcttatgatattgagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctaggattttttaatcacttggtttcagaattcagtgtaatttcttatgatattgagc 380

                                                                       
Query: 181 acgtgcaaacacacacacacacacacacacacactgctcagaattccttgaatttcttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acgtgcaaacacacacacacacacacacacacactgctcagaattccttgaatttcttgt 440

                                                                       
Query: 241 atttgtatattgagtatttttcttaatttgaaatattttataccactgttttggatattt 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttgtaaattgagtatttttcttaatttgaaatattttataccactgttttggatattt 500

                                                                       
Query: 301 tttatttgtttcctcctcttttacttatttttagaatcttaattctaaggaaccaatact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttatttgtttcctcctcttttacttatttttagaatcttaattctaaggaaccaatact 560

                                                                       
Query: 361 tccttttttccatttaattatctccctgtctttttcttaatttttctattcatctacttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccttttttccatttaattatctccctgtctttttcttaatttttctattcatctacttt 620

                                                                       
Query: 421 tagttcatttctccccattattttttgtactttcagttaaacttttcatttaattttact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagttcatttctccccattattttttgtactttcagttaaacttttcatttaattttact 680

                                                                       
Query: 481 attcctttgctggtacctctgtataaggtctaactgtgaagtttcccccataggcctatg 540
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 attcctttgctggtacctctgtataaggtttaactgtgaagtttcccccataggcctatg 740

                              
Query: 541 tattcaaatatgttatcca 559
           |||||||||||||||||||
Sbjct: 741 tattcaaatatgttatcca 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)