BAC Information

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BAC

Clone NameMSMg01-299A08
Chromosome4 (Build37)
Map Location 72,307,425 - 72,307,652
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667638, EG667649, Tle1
Downstream geneAldoa-ps2, EG384113, LOC667713, LOC100039698, OTTMUSG00000001246, LOC100039726, LOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299A08.T7 (MSMg01no299_a08.b1)MSMg01-299A08.TJ (MSMg01no299_a08.g1)
ACCAG425909AG425910
length754773
length of high quality
(start - end)
324 (75 - 398)226 (72 - 297)
definitionCHROMAT_FILE: MSMg01no299_a08.b1 PHD_FILE: MSMg01no299_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:49 2005CHROMAT_FILE: MSMg01no299_a08.g1 PHD_FILE: MSMg01no299_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGGATCCGCGGAA
TTCAACCAGAAGTTACATGATCAGCCTACCTCACGAATGGATTTACCTCT
ATTACATCAGTGGTTACAGCTTGCCTAGAATGTTTGTTTACTAAGGAGAA
CAGGGGTCATAGCTGAGTAAGACTGTTAGTGAAATTTCTCTCCTAGCAGT
TGGCATTACTTTTACTGGCAACTCACGGTAAGCCTGCATGGAAGAAGCTA
CCATCTAAGTTCCAACTTGATTTATCTGTGTCCTATCACCACAGCATGGA
ACTGTCTTAAGCGATGGGATCTTCTGACATGGGGTTGCACACTCCTGTCA
TTGAAATTCTTATTTAATAACCTATGGATTATGTGAAGTATAGAAGAATT
TTAATCCAGTAACCTGCCCTGCTCTATCAAGGGATCATAATCCCCTGATA
TGAAAAGAATACCGACTTATCCCACCTTTTTATCCCCTCCGCCCTGCAAT
ACCCATATTTTAATCCCCCCCTGGTTGCCAAAACAGAACACCCCCCTTTA
GAACCCCCCCCGTTTAATCCTTAAAAACAATTGGAGGTGGGGGATTTGGT
GGAAGCCATAACAAGGGTGGGACCAAATTTCCAAAAAAAAGGGGTTTTGG
ACCCGAAAATGGAAGTCCCCAAACCCTTTAGGGGTTAATCTCCCCCCACT
CTTTTCTCTCGGGGCACGAGCCCTCCAAGGGTCCCCCCGTTCTCAAGCTT
CATG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTATGATTAAAATAAAAGAGGACCAGGGAA
TAATTAAAGTAAAAAAAAAAAAAGATTTTATTTAGAAACTATTATAACCG
GGAAGGAAGGTTAGACATGATGAAGAGCCTGGGTCAGTGTGGTGACTAAA
AACAAACACCAAAACAGTGGAGGACTTTGAGCAACCTCATTGGACATGAC
CCCCGTGGAGGGCACTGCATGGTGGTTGATCTGCTAACAACAGAGCAGGA
ACTAGACAACATAATCAGAGTGGTCATGGACTACTGGTCAAGGGTCCTTG
TTAAAGCAACTCAGCAGGATTTTGGAGAACACTTGGAGAAATGAAACTAC
GATACAATACTATATGATATTATAGAAGGCAAAAGGCCTAGACCTAATTG
AAAAGAGTTTTCCCAGGAGCTTCACTAAAGTTTACTCCAGGAGGCCTTTT
TCCCACTTACCCCATACCTGTGTAAACAAACCCCAAATGGTGGGGGGCAA
ATCCCTTCCTAAAAAATGCCCCCCCCTTTTATGGAAAGGCAGGAAAAAGT
TGGGGTTTCCCTGCCCCATTTATTTCCTAAACCCCACCCAACCCAACAAG
TTTTTCCGGACCCCTTTGGATCTCCCAAATTGGCGGAAAACAAAAAAAAT
CTTCCCGGTCTCACTTTTCAACACCCACACCGCCAATTTTTCCCTAAACA
CCCCCTTTCTCGCCTCTCCCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_a08.g1 MSMg01no299_a08.g1 CHROMAT_FILE:
MSMg01no299_a08.g1 PHD_FILE: MSMg01no299_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:50 2005
         (226 letters)



>mm_chr4_72307227_72307852
          Length = 626

 Score =  422 bits (218), Expect = e-122
 Identities = 225/228 (98%), Gaps = 2/228 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgattaaaataaaagaggaccagggaataattaaagtaaaaaaaaaaaaa--gatttt 58
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 199 tatgattaaaataaaagaggaccagggaataattaaagtaaaaaaaaaaaaaaagatttt 258

                                                                       
Query: 59  atttagaaactattataaccgggaaggaaggttagacatgatgaagagcctgggtcagtg 118
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 259 atttagaaactattataaccgggaaggaaggttagacatgatgaagagcttgggtcagtg 318

                                                                       
Query: 119 tggtgactaaaaacaaacaccaaaacagtggaggactttgagcaacctcattggacatga 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tggtgactaaaaacaaacaccaaaacagtggaggactttgagcaacctcattggacatga 378

                                                           
Query: 179 cccccgtggagggcactgcatggtggttgatctgctaacaacagagca 226
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cccccgtggagggcactgcatggtggttgatctgctaacaacagagca 426


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)