BAC Information

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BAC

Clone NameMSMg01-299H15
Chromosome4 (Build37)
Map Location 139,699,143 - 139,699,453
singlet/doubletsinglet
Overlap geneIgsf21
Upstream geneHspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a
Downstream geneLOC100040728, Arhgef10l, Rcc2, Padi6, Padi4, Padi3, Padi1, Padi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299H15.T7 (MSMg01no299_h15.b1)MSMg01-299H15.TJ (MSMg01no299_h15.g1)
ACCAG426239AG426240
length754747
length of high quality
(start - end)
315 (42 - 356)---
definitionCHROMAT_FILE: MSMg01no299_h15.b1 PHD_FILE: MSMg01no299_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:25 2005CHROMAT_FILE: MSMg01no299_h15.g1 PHD_FILE: MSMg01no299_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGCTATGTGAGCCTGTGTCGGGTATCATCGAACCACCTTAAATAGTAAG
ATTTATTTATTCATTCACTCATGTATTCATTTGCCTGTTTGCTTGCTTAT
GTGTGTATGTCATGTGAGTGCTGGTATTCTCGAAGGCCACTAGAGGGTGC
TATAACCCTTGGTGTTGGAGCTTCAGGTAACCTTGGGAAAGTCCTCTGTA
GGAGCAGCAAGCACTCTTGACTACTGAGCCGTCTGTCCGTCTCTCCAGCC
CACCCTGCTAGAGTCACATAAAGTCTAAGAAGAGGGTGAATTGGAATCTG
AGCATCTTGTTTGTAGGATCTGAGCGTTGATGACTTAGGAGACGATGCCA
CTCCGGGGCCTGTTACCTCTTCGAGCATTAGGAAGAGGAAGGTCATTGCT
ATTTGCAGGTGATGTAATTATATAACAATTAAGAAAGTTGAAAGACAGCC
TACCAGAACTGACGAGTGTCAGTACAATGTTTGCCTAGATGGCTGGCCTG
CATACATCAGCAGTTTCCTTCCCTCTCCAGGGACCCCAGTGTGCCATGAG
GGGCACTGTGGGCTTCTGAGGCTGCTTGTAGGGGTAGAGGGTGGGGACAG
GGATGTTTCACCACCTCTGCCACGCACCCTGCCCACACTCTAACTGCTCT
CTCCTCGATACTGCTCCATCTGACACTTCTCTTCCCTCCTTATCTGCCTG
CTTN
ACAGAGGGAGGCCTGGAGGGCGCCCGGTTCCTCACTGCCGGNGACCNANA
GAAGGTTCCCCAAAACGCCGGAAACACGGACCCNGCCCCACCCCCACGCC
CAGAACCCGGCCCCCCCCCCCNCCGGAGACGGGGAGGGAGACAAGGCNNG
CNCACCAAGAGCCGCGGGGAAGGACCAGGACGAGGACCCGGGGGACAGCC
CAGNGGCCCAGACGGGACGCGCAGCACGCGGGAGGNGGAGGCAAGAGGGG
CCCAAGCCNGAGGCCAGCCCGCGCCACAGACCGACCACAGGCCCAACCAG
AGCAACAAGGCTTCATCCTTTTGCAACGAGCACGCCCCCCAAAAGGAAAT
GTTAGAGTANAATTCAAAAACAGAGCCTGTTTTTTTTTTTTGTGNNTGNN
NGGGGNNNGNNNAAAAANNTNTATNTNTAAGGGNNNTTGGTTTTTAGTGT
ATTTTTTTTTNNTTTCTTTTATTNNTTAGGTTATAGAAATTGATAATATT
ATAATTTATATATTTTTATATTTGTATTAATAATATATTAATTATATATT
TTTTTTTATTAAAATTAATTTAATGATTATTTAATATCTATTAATTTAAT
AATATACGATATGTTGTTGTTGGTGAGTGGGAAAGTGTAATATGAATTTT
TTTTTTTTTTTTTTTTAAAGGGGATGAGTTGTGCGACTACACCCCTATTA
TTCTTCCTTCTCTACTCGCCATCCACTCTCCACATCTGCACCCCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_h15.b1 MSMg01no299_h15.b1 CHROMAT_FILE:
MSMg01no299_h15.b1 PHD_FILE: MSMg01no299_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:25 2005
         (315 letters)



>mm_chr4_139698939_139699653
          Length = 715

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagctatgtgagcctgtgtcgggtatcatcgaaccaccttaaatagtaagattta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagctatgtgagcctgtgtcgggtatcatcgaaccaccttaaatagtaagattta 264

                                                                       
Query: 65  tttattcattcactcatgtattcatttgcctgtttgcttgcttatgtgtgtatgtcatgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttattcattcactcatgtattcatttgcctgtttgcttgcttatgtgtgtatgtcatgt 324

                                                                       
Query: 125 gagtgctggtattctcgaaggccactagagggtgctataacccttggtgttggagcttca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagtgctggtattctcgaaggccactagagggtgctataacccttggtgttggagcttca 384

                                                                       
Query: 185 ggtaaccttgggaaagtcctctgtaggagcagcaagcactcttgactactgagccgtctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtaaccttgggaaagtcctctgtaggagcagcaagcactcttgactactgagccgtctg 444

                                                                       
Query: 245 tccgtctctccagcccaccctgctagagtcacataaagtctaagaagagggtgaattgga 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 tccgtctctccagcccaccctgctagagtcacagaaagtctaagaagagggtgaattgga 504

                      
Query: 305 atctgagcatc 315
           |||||||||||
Sbjct: 505 atctgagcatc 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)