BAC Information

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BAC

Clone NameMSMg01-299I08
Chromosome4 (Build37)
Map Location 59,733,890 - 59,734,157
singlet/doubletsinglet
Overlap geneE130308A19Rik
Upstream geneOlfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg, LOC100041535, LOC634731, LOC666719, Rod1, Hsdl2, LOC100041592
Downstream gene1110054O05Rik, Snx30, Slc46a2, LOC100041656, Mup4, LOC620807, LOC100041658, LOC620846, Mup2, LOC620882, LOC100041687, LOC667221, LOC100038948, LOC620997, Mup1, LOC620942, LOC100039008, LOC100039028, LOC620982, LOC100039054
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299I08.T7 (MSMg01no299_i08.b1)MSMg01-299I08.TJ (MSMg01no299_i08.g1)
ACCAG426271AG426272
length842775
length of high quality
(start - end)
72 (124 - 195)268 (125 - 392)
definitionCHROMAT_FILE: MSMg01no299_i08.b1 PHD_FILE: MSMg01no299_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:28 2005CHROMAT_FILE: MSMg01no299_i08.g1 PHD_FILE: MSMg01no299_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGAAGGAAATAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG
AAGGAAGGAAGGAGGGAAGCAAATTATATTAAAGCATTTACTCGAGGCTA
CCATAATACAATATCATTGTTTAGGTATCAGACTCTTGTGCCTCAGTTCT
AGGCATTAGAAAGTTCAAGCTCAAGACGCCACAAGGTAGGCTTCATTCTG
GAGCACCTTCTCCTGGCACGTAACTGGTCTCATGCACGACCCCCTCATGC
TTGCTTTGCGAGAGAGCCAACTAGTTTTCTAGGCTGGCCTCACACTCAGA
GATTCCCCGCTTTTGCTGGGATTAAGGCTGTGCGCTACCCATAAGCCTGC
GCAAAGTATCTTACCCACATTAGACACATCCTTTTGCTTGTGTTTTTTCC
AGCGCCTCTACTACGTCCATGAATTTATTACCACGTTTGCCTGAATGAAT
GTACTGCATTTCACGCCTTTCCCCTTCCTGGACACCCCAATATGAACGGC
CCTCTCCCCCCTTCACGCACAGCCCCCCTCGCCGCTAATAGGCCCCTCTA
CCACCCTCCCAAATGCTCCACTTTTCAACCAGCAACTTAATCTTACAACC
TCCAATCCTCTTCCCGTACCCCCTCCCGGCCCTCTCTTCCCTGCACCCCT
CGCACTAACCCTCCGCCCCTCACTGGCACACCTTCGGTCACCCTTATCAA
CTCCTTCCCACTCCATTCACTAACCTAGGTCACCACACACCCTTACCCCG
CCACTATTCTCTTCACTTCCCTCTCCACCAAACTATACCTTA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCGTTTAAAAAAAGAAAAAAACAAATCAGAAA
GGAAATCAAGAGTCATTCAAGACACTGTGTCCTCAGCTCCTCCTCCTGCC
TCACCTCCCACTTTTAGTCTCCTTCATAGATGGATTTATTTTTTTAATTT
TTAAAGATTACATATGAGTCAGGAGACAGTTTTACTGCCTGTGCAGTATT
GTTGCGCCAGATCAGAAAGTAGCGTCATAAGCTCAACATGAATCTATTTA
TTTATTTGCATATATTTTTAGCATAGAGTTTCAGCCGTGCCTCATTTTCA
CCGGATATGGAGGTCTCAGCATGTACAGGACTTTCCTTTGGGGAGGTGGG
CTATAGAAGAGGAATACAGGTGCCATCCTTTTTTGGAGATGTCTCATTTA
AAAACAATATGCAAGCTCTGCTATGGGTTGGGGGGGCGGTAATAAAAGAC
TGTTCCATAGCTCATTTTTACTGCGGCGCTTACACCTGAATAGAATGTTC
TTTGTCCCTCAATCCGCGGAAATGACTTTGATCTTCCCCATTCCCAGAAA
TTTAAAACTACCCAAATCTTCGACAATATTTGACTGTCACATTGTACGTT
ATGCTCGCCACAGAACGCTCAGACTAGACGCCCCCCCCGAACACCCTGGC
CGCTTGCGTATAGTCCCGCTTGCTCCACTCCTGCAGTCACCCCCCAATCT
TTAACTTTCGACTCCTCTTTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_i08.g1 MSMg01no299_i08.g1 CHROMAT_FILE:
MSMg01no299_i08.g1 PHD_FILE: MSMg01no299_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:28 2005
         (268 letters)



>mm_chr4_59733690_59734357
          Length = 668

 Score =  518 bits (268), Expect = e-151
 Identities = 268/268 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtgtcctcagctcctcctcctgcctcacctcccacttttagtctccttcatagatgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtgtcctcagctcctcctcctgcctcacctcccacttttagtctccttcatagatgga 260

                                                                       
Query: 61  tttatttttttaatttttaaagattacatatgagtcaggagacagttttactgcctgtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttatttttttaatttttaaagattacatatgagtcaggagacagttttactgcctgtgc 320

                                                                       
Query: 121 agtattgttgcgccagatcagaaagtagcgtcataagctcaacatgaatctatttattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtattgttgcgccagatcagaaagtagcgtcataagctcaacatgaatctatttattta 380

                                                                       
Query: 181 tttgcatatatttttagcatagagtttcagccgtgcctcattttcaccggatatggaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgcatatatttttagcatagagtttcagccgtgcctcattttcaccggatatggaggt 440

                                       
Query: 241 ctcagcatgtacaggactttcctttggg 268
           ||||||||||||||||||||||||||||
Sbjct: 441 ctcagcatgtacaggactttcctttggg 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)