BAC Information

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BAC

Clone NameMSMg01-299O05
Chromosome4 (Build37)
Map Location 62,643,096 - 62,802,652
singlet/doubletdoublet
Overlap geneZfp618
Upstream geneLOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231, Zfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3
Downstream geneAmbp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299O05.T7 (MSMg01no299_o05.b1)MSMg01-299O05.TJ (MSMg01no299_o05.g1)
ACCAG426535AG426536
length728814
length of high quality
(start - end)		372 (46 - 417)162 (78 - 239)
definitionCHROMAT_FILE: MSMg01no299_o05.b1 PHD_FILE: MSMg01no299_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:56 2005CHROMAT_FILE: MSMg01no299_o05.g1 PHD_FILE: MSMg01no299_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,802,287 - 62,802,652)(62,643,096 - 62,643,235)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTACTAATACCCAAATGTCATCATAAAAATTTGCTCAATTCTTA
GTGGCTTTGGATCAAGATCTTTCTATGTAGCCCAGGCTGGCCTCAAACCC
AAGATTGCTCTGCCTCTACCTATCCGTTCTGGAATCAGAGACATGTGCTA
CCCCGATAGGCCACTCAGTTCTTTTGGGGAAGACAAACTGAGGGCCCTGA
GCTGTCCCCTGAGGATACTTCTCCCTGTAGCTCATTTTTCCTGTCTCCAA
TTGTCTGTCCTGAAGGCATTTGCTTCTGTGACAGTTCTGAGCCTATCAGG
CTAGGCATCTTCAACCTCCATCATGACAGGCATTCCCGGGACTCGCTACA
GCTTTAACTAATAAACACCCCGCGTACCTTGACAACATAATCATCCCTGT
CTGTAACTCGCTTCCAGGAATCCACAACACTTCTCCCAAAAGGGCTCAGG
ATTCATTCTCCGCCCAGGAGCCCTTACCCCGAGGAGGCGCAGAGTATCCA
GTCTTGCCTTGGGGGATTTTAGTGGTTATTCTCCATATTTACTTGCTACA
GTATATATGTGGCTGCTTAAGAAACATCTTCTTACACACGTGTACACATT
TTATTCATTGTAATATGTATTGCACTTTCTGTATGTGGAAAACATTCTAA
ATGTATAGAATGTAATCTGCACAAATGC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGAGAGAGGTCCCCATAGAGA
GTATGTAGTTATCAAACTTGTGATATGAAGACACAGTCCAGGGAAATGCA
GTTCAAACCCATAGTGAACTGTCTTACCCATATAAGAGGAAAAAAGGGAG
GGAGAGAGGGAGGGAAGGAAGAGAGGGAAGGGAGGNNNNNNNNNNNNNNN
NNNNTNNTNTTNNNNNNTNNNNNTNNNNNTTTTTTNNNTTTNTTTTTTTT
TTTTNTTNTTNTNTTTTTNNNTNNTTTTTTTTTTTTTNNTTTTTTNNTTT
TTTTTTTTTTCTTTNTTTNTTTTTTCCCTTCCTCTCCCCCCTTTTCCTTT
TTTCCCTTTTTTTTCTTTCTTTNTTTTTTTCCCCCCCCCCCCCNNTTTTT
TGNTTTCTTTCCTCTCTTCCCCTTTTCCCCTTTCTTCCTTTTTTCTTTTC
CCCTTTTCCCCTTCCTTCCCTTTTTCTCTCCTTTTTCTTCTTTTTCTCTT
CCCTCCTTCTCCCTTTTTCTTTCTTCTCCTCTTCCTTTCTCCCTTTCTTT
CTTCCGCTCTTTCCCCCCTTTCCCCCCTTCTCCCTCCTTTTTCTTTTCCC
TTCCTTTTCCTTTCCTTTTCCCTCCCTTTTTCTCTTCCATCTACCCCCCC
CTCCTTCTCTCCCCTTCCGCTTTTTTTTCTTTTTCCCCCTTATCTCCCTC
TTTATCTTCCCGCCCACCTTTCTTTTCCCCTTCCCTTCCCCTTCCTCCCC
CTTTCTTTTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_o05.b1 MSMg01no299_o05.b1 CHROMAT_FILE:
MSMg01no299_o05.b1 PHD_FILE: MSMg01no299_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:56 2005
         (372 letters)



>mm_chr4_62801927_62802698
          Length = 772

 Score =  692 bits (358), Expect = 0.0
 Identities = 364/366 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctactaatacccaaatgtcatcataaaaatttgctcaattcttagtggctttg 64
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gaattctctactaaaaaccaaatgtcatcataaaaatttgctcaattcttagtggctttg 667

                                                                       
Query: 65  gatcaagatctttctatgtagcccaggctggcctcaaacccaagattgctctgcctctac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gatcaagatctttctatgtagcccaggctggcctcaaacccaagattgctctgcctctac 607

                                                                       
Query: 125 ctatccgttctggaatcagagacatgtgctaccccgataggccactcagttcttttgggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ctatccgttctggaatcagagacatgtgctaccccgataggccactcagttcttttgggg 547

                                                                       
Query: 185 aagacaaactgagggccctgagctgtcccctgaggatacttctccctgtagctcattttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aagacaaactgagggccctgagctgtcccctgaggatacttctccctgtagctcattttt 487

                                                                       
Query: 245 cctgtctccaattgtctgtcctgaaggcatttgcttctgtgacagttctgagcctatcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cctgtctccaattgtctgtcctgaaggcatttgcttctgtgacagttctgagcctatcag 427

                                                                       
Query: 305 gctaggcatcttcaacctccatcatgacaggcattcccgggactcgctacagctttaact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gctaggcatcttcaacctccatcatgacaggcattcccgggactcgctacagctttaact 367

                 
Query: 365 aataaa 370
           ||||||
Sbjct: 366 aataaa 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no299_o05.g1 MSMg01no299_o05.g1 CHROMAT_FILE:
MSMg01no299_o05.g1 PHD_FILE: MSMg01no299_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:56 2005
         (162 letters)



>mm_chr4_62642896_62643457
          Length = 562

 Score =  255 bits (132), Expect = 8e-73
 Identities = 138/140 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggagagaggtccccatagagagtatgtagttatcaaacttgtgatatgaagacacagt 60
           |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 201 agggagagaggtccccatagagagtacgtagttagcaaacttgtgatatgaagacacagt 260

                                                                       
Query: 61  ccagggaaatgcagttcaaacccatagtgaactgtcttacccatataagaggaaaaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagggaaatgcagttcaaacccatagtgaactgtcttacccatataagaggaaaaaagg 320

                               
Query: 121 gagggagagagggagggaag 140
           ||||||||||||||||||||
Sbjct: 321 gagggagagagggagggaag 340


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 562
Length adjustment: 8
Effective length of query: 154
Effective length of database: 554
Effective search space:    85316
Effective search space used:    85316
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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