BAC Information

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BAC

Clone NameMSMg01-300D21
Chromosome4 (Build37)
Map Location 45,199,654 - 45,365,576
singlet/doubletdoublet
Overlap geneFrmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32
Upstream geneMelk, Pax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik
Downstream geneMcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300D21.T7 (MSMg01no300_d21.b1)MSMg01-300D21.TJ (MSMg01no300_d21.g1)
ACCAG426784AG426785
length747747
length of high quality
(start - end)
237 (131 - 367)238 (127 - 364)
definitionCHROMAT_FILE: MSMg01no300_d21.b1 PHD_FILE: MSMg01no300_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:21 2005CHROMAT_FILE: MSMg01no300_d21.g1 PHD_FILE: MSMg01no300_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,365,341 - 45,365,576)(45,199,654 - 45,199,891)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAA
TTCACTTTGTATTATCACAATGACCTCCAACTCAGGCATCTTACTAACTC
TGCCTCTGGAGTGCTGGTTTTATACCTGCATGCCATCACACCTGGCTGAC
TTACATATTTTTGTTTATAGTTAATTTGAAAAATCCTTACAATCTGGATT
TAATTTACAGTTGTTGGCTGGAGGTGTTGGTCTGTGTTAGCATGTATGAG
GACTGGTTTATGGTTAAACATTTCCTGGATAGTAGTCTAGATTTAGAGAG
GTTTATTTCTATGTAATCTTTATGCTGAAAGTGAGATCTTTTGGATTTTA
GATTTCACAATCTTCTTTTTATTCCTTTCCCTGCACTGGGCCATAAAATC
AAGTCTCCTGTCCCCTGTACTCAATTCTATCAAATAAAAGCTCATGGTCA
CAAAGGTCACCAACATATCTTACACTGTAAAAGTTGAAGCCTGTTACCTC
TAATTGTTCATGCTTCTACTTCCTTTGCAGCCCCAAGTTCCTTTCTTTCC
TGTTCATTATTCTCTGTATTAAAATGTCCAAACAGGTATATAATTACTTT
ATTCAGCATATATAATTGTCTTATTACAAACGCTATTCACAACATTTTAA
CTATGCAGTCTTAGTTCTTCTTCAGCTTGTCTTACACCGACTAGTTTTGT
ACTCAGCCATCTTATGCCATCATCATTGTGGACTTGTTCCTTTGCGC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXGGAGAATTGGAGGAGCTGCCCCC
CAGGAAGGTAGAAGGAATTTAACGCCCTCAGCAGGGAGGTCATTTTCATG
GAAAGGAACTGGATGACCACTGGCTTGTAAAGTTCAGGTCAGCAAGGAGC
ATGGAATCCAGTGGAAGTGCAGAGCAGGCAGAGCCCTCTGAGAGCAGAAG
ATAGGCAGAAGTGCCTTGGTCTCCGCTTGGGATTTGGGTCCTCTGAGTTT
CACTCTTCTCATTTATCAAAGGAAATTATAGATAATTGTCAATGCGCAAG
ATAGATCGTAGGTATTAAGTTCTATCCCCCCGCCCCCATATAATAGGCAT
TTGGTCAGAATTGGATCCCTCTGTAGTGAGAACAAAAAAAACGAGTTCGG
TGTGTTGCTGTGCACTCGTGGAATATAAAAATGGCATCTTTGTCTTACTT
TCTGCCTTGACTTACAACCTTCCTACCAGGGCTGCGACAGCATGTTCATT
CTCAGGGAACCTCCTGGTCCCAGAGATGGGTACTTGTCATCTGGAGGGGG
CTCCAATCTGATACGGACATGAACAGCTTCCAGTGTCCTGTAAATACTAA
TCGTGGCGGAGGTTGCATATGCTCTAAATCAGAAGCCTCAATCTCTGGCC
TTCCTCAAGTTTTAACTTGTGGCGGCCTTTGGATCCCCCCCTTAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_d21.b1 MSMg01no300_d21.b1 CHROMAT_FILE:
MSMg01no300_d21.b1 PHD_FILE: MSMg01no300_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:21 2005
         (237 letters)



>mm_chr4_45365141_45365777
          Length = 637

 Score =  433 bits (224), Expect = e-126
 Identities = 233/236 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgccatcacacctggctgacttacatatttttgtttatagttaatttgaaaaatccttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tgccatcacacctggctgacttacatatttttgtttatagttaatttgaaaaatccttac 377

                                                                       
Query: 61  aatctggatttaatttacagttgttggctggaggtgttggtctgtgttagcatgtatgag 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 376 aatctggatttaatttacagttgttggctggaggtgttgatctgtgttagcatgtatgag 317

                                                                       
Query: 121 gactggtttatggttaaacatttcctggatagtagtctagatttagagaggtttatttct 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gactggtttacggttaaacatttcctggatagtagtctagatttagagaggtttatttct 257

                                                                   
Query: 181 atgtaatctttatgctgaaagtgagatcttttggattttagatttcacaatcttct 236
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 atgtcatctttatgctgaaagtgagatcttttggattttagatttcacaatcttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no300_d21.g1 MSMg01no300_d21.g1 CHROMAT_FILE:
MSMg01no300_d21.g1 PHD_FILE: MSMg01no300_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:21 2005
         (238 letters)



>mm_chr4_45199454_45200091
          Length = 638

 Score =  429 bits (222), Expect = e-125
 Identities = 234/238 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcagcagggaggtcattttcatggaaaggaactggatgaccactggcttgtaaagttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ctcagcagggaggtcattttcatggaaaggaactggatgaccactggctagtaaagttca 260

                                                                       
Query: 61  ggtcagcaaggagcatggaatccagtggaagtgcagagcaggcagagccctctgagagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtcagcaaggagcatggaatccagtggaagtgcagagcaggcagagccctctgagagca 320

                                                                       
Query: 121 gaagataggcagaagtgccttggtctccgcttgggatttgggtcctctgagtttcactct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagataggcagaagtgccttggtctccgcttgggatttgggtcctctgagtttcactct 380

                                                                     
Query: 181 tctcatttatcaaaggaaattatagataattgtcaatgcgcaagatagatcgtaggta 238
           |||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||
Sbjct: 381 tctcatttatcaaaggaaattaaagataattgtcaatgcacaagatagatcataggta 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)