Query= MSMg01no300_m21.b1 MSMg01no300_m21.b1 CHROMAT_FILE:
MSMg01no300_m21.b1 PHD_FILE: MSMg01no300_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:02 2005
(689 letters)
>mm_chr4_118949381_118950469
Length = 1089
Score = 1249 bits (646), Expect = 0.0
Identities = 675/690 (97%), Gaps = 10/690 (1%)
Strand = Plus / Minus
Query: 1 aggtgtgagtttaccgataacagacagtattggttaaaacctaatgttgggggccgggtg 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 775 aggtgtgagtttaccgataacagacagtgttggttaaaacctaatgttgggggccgggtg 716
Query: 61 tggtggcgcacgcctttaatcccagcactcgggaggtagaggcaggcggatttctaaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tggtggcgcacgcctttaatcccagcactcgggaggtagaggcaggcggatttctaaatt 656
Query: 121 cgaggccagcctggtctacagagtgagttccaggacagccagagctacacagagaaaccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 cgaggccagcctggtctacagagtgagttccaggacagccagagctacacagagaaaccc 596
Query: 181 tgtctcaaaaaa-aaaaaacaaacaaacaaaaataaataaataaataaaacctaatgttg 239
|||||||||||| ||| || | |||||||||||||||||||||||| |||||
Sbjct: 595 tgtctcaaaaaataaataa---------ataaataaataaataaataaaacctattgttg 545
Query: 240 attgtgtttaatatgctaatgaattttctaggtacaaccatgaatatacgtgcatagacc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 attgtgtttaatatgctaatgaattttctaggtacaaccatgaatatacgtgcatagacc 485
Query: 300 ctctttcaggtcattttacattaaaatagtaacagctgagtcacctgacaaacatagaat 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 484 ctctttcaggtcattttacattaaaatagtaacagctgagtcacctgagaaacatagaat 425
Query: 360 ctggtagtttcttagtccttaaagctaggtgcctcagcattccagccaagaacctggaag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ctggtagtttcttagtccttaaagctaggtgcctcagcattccagccaagaacctggaag 365
Query: 420 tttcctggagagctctatgtcttcagttcaaagtagaagcttgcaagtatgtcttgtggt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tttcctggagagctctatgtcttcagttcaaagtagaagcttgcaagtatgtcttgtggt 305
Query: 480 attgggaaaagaatcaagcagtagagcagagcagcagcaagaaggccccctctttatctg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 attgggaaaagaatcaagcagtagagcagagcagcagcaagaaggccccctctttatctg 245
Query: 540 gttactaccacaatttgggatgggacttcctatgatgataataataaaatatgaaaatag 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gttactaccacaatttgggatgggacttcctatgatgataataataaaatatgaaaatag 185
Query: 600 taaatgtgatcctaatctaactaggaaggagaatgacccaggggctattatagaattgtt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 taaatgtgatcctaatctaactaggaaggagaatgacccaggggctattatagaattgtt 125
Query: 660 ctgcataccaagtctttctccaccccaccc 689
||||||||||||||||||||||||||||||
Sbjct: 124 ctgcataccaagtctttctccaccccaccc 95
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no300_m21.g1 MSMg01no300_m21.g1 CHROMAT_FILE:
MSMg01no300_m21.g1 PHD_FILE: MSMg01no300_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:02 2005
(290 letters)
>mm_chr4_118761793_118762482
Length = 690
Score = 514 bits (266), Expect = e-150
Identities = 284/290 (97%)
Strand = Plus / Plus
Query: 1 accttgctttccttcctcatgttggtcactgttcatcattgcctatgcacagttgtctgg 60
||||||||||||||||| ||||||||||||||| ||||||||||| ||| ||||||||||
Sbjct: 201 accttgctttccttccttatgttggtcactgtttatcattgcctaagcagagttgtctgg 260
Query: 61 actgccactcctttggtctattttggtttttttagactgtttcagttagtgtatgcctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 actgccactcctttggtctattttggtttttttagactgtttcagttagtgtacacctag 320
Query: 121 tctcaatgccttcctgagcagaagttcatggccctgtcattgacactgggattagttgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcaatgccttcctgagcagaagttcatggccctgtcattgacactgggattagttgag 380
Query: 181 aagtgttggggttggctctgagctggagctatgagattttctgtctgtcgtctgtctgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtgttggggttggctctgagctggagctatgagattttctgtctgtcgtctgtctgtc 440
Query: 241 tgcctacctgtctgttctcatccttctcaacagttggaacacttagctac 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcctacctgtctgttctcatccttctcaacagttggaacacttagctac 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
