Query= MSMg01no301_a17.b1 MSMg01no301_a17.b1 CHROMAT_FILE:
MSMg01no301_a17.b1 PHD_FILE: MSMg01no301_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:20 2005
(320 letters)
>mm_chr4_41063644_41064363
Length = 720
Score = 592 bits (306), Expect = e-173
Identities = 312/314 (99%)
Strand = Plus / Minus
Query: 5 gaattctaggtgagagtcttgtgtggggagccaggaagttagactgtgcctgcacctagg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 518 gaattctaggtgagagtcttgtgtggggagccaggaagttagactgtgcctgcacctggg 459
Query: 65 aggtgggattgttggtttcccattgtaaccttaggagctcttgggtcccagcagagagca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aggtgggattgttggtttcccattgtaaccttaggagctcttgggtcccagcagagagca 399
Query: 125 cggtgtcaggttcctaattctccaccaggtgtgtgagagccttgggcaggcctcggcagg 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aggtgtcaggttcctaattctccaccaggtgtgtgagagccttgggcaggcctcggcagg 339
Query: 185 ccagggactagtctgggggtgaccagcagtggaaaactctgcctcggggctgaagctggg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ccagggactagtctgggggtgaccagcagtggaaaactctgcctcggggctgaagctggg 279
Query: 245 agataaacaccccaccccactaactcgaatgtggtgtccctttcataacctttgttcttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 agataaacaccccaccccactaactcgaatgtggtgtccctttcataacctttgttcttt 219
Query: 305 gggagagggtattg 318
||||||||||||||
Sbjct: 218 gggagagggtattg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_a17.g1 MSMg01no301_a17.g1 CHROMAT_FILE:
MSMg01no301_a17.g1 PHD_FILE: MSMg01no301_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:20 2005
(419 letters)
>mm_chr4_40948993_40949812
Length = 820
Score = 774 bits (400), Expect = 0.0
Identities = 415/420 (98%), Gaps = 1/420 (0%)
Strand = Plus / Plus
Query: 1 tctgtgcatctaagaataatcttgaatttctgatcctcctgcctaaaccttctgagttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtgcatctaagaataatcttgaatttctgatcctcctgcctaaaccttctgagttct 260
Query: 61 gggattacagacatacactgccacacttgcattatgcaagttgtagcccaagcggggatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggattacagacatacactgccacacttgcattatgcaagttgtagcccaagcggggatt 320
Query: 121 catagtagtggcaaaaccaaacaaacctgtagccatcataactggatgtgacatgcggtt 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 catagtagtggcaaaaccaaacaaacctgtagccgtcataactggatgtgacatgcggtt 380
Query: 181 ttgattttcatttctgtggccacttgtatgtcttttgggaaaggatctctagatcatttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgattttcatttctgtggccacttgtatgtcttttgggaaaggatctctagatcatttg 440
Query: 241 tactttttaaaagctgggttgttctttctgttgtcaatttgtaatatatatctgaatctt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 tactttttaaaagctgggttgttctttctgttgtcaatttgtaatatatatctggatctt 500
Query: 301 ggatgcttatgaggtatgtaatttataaatgtgtttctgttttgcgaggtgttgat-ttt 359
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 501 ggatgcttatgaggtatgtaatttataaatgtgtttctgttttgtgaggtgttgatattt 560
Query: 360 ttttatgatgtccttctatttcatacacaaaagctttttattttattgagtcctttttta 419
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttatgatgtccttcaatttcatacacaaaagctttttattttattgagtcctttttta 620
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 820
Length adjustment: 9
Effective length of query: 410
Effective length of database: 811
Effective search space: 332510
Effective search space used: 332510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
