XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TATGCTAATTCTATCTAAACCTGGGTTCTTTTTGGTTGGGAGATTTTGAT
GACTGTTTCTACTCCCTTAGGGTTATAGGACTGTTCAGATAGTGTACCTG
ATTTTGATTTAGCTTTGGTAATTCGTATCTGTTTAGAAAAATCATCCATT
TCATTTAGGTTTTCCAGTTTTGTGTAATACAGGATTTTGAAGTAAAATCT
AATGATTCTTTGAATTTCTTCAGTGTCCTTTGTTATCTCTCTTTTCATAT
CTGATTTTGGTAATTTGGGGGTCTCTTTCTCTCTCTGCCTTTTAGTTAGT
TTGACTAAGGGTTTGTCTATATGATTGACTTTCTCAGTGAAGTAACTTTT
GCACTTGTTCTTTGTATTGTTCTCATTGTTTCCATTTGATTGGTTCTACT
CCCGAATTTGATTATTTTCTGCTGTTGCTTCTGCTGCTTCTCCTGCTGCT
TTTTTCTTCTTTCTTTCTGCTCTCTTCTTTTCTTCCTTCTTTCTTTTCTT
TCTTCTTTCTTTTCTTCCTTAATTTCTTCCTTCCTTCCTTCTTCTTCTTC
CTTCTTCCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCCTTCTTCC
TTACTTCCCTCCTTCCTTCCCTCCTTCCTTCCCTTCCTTCTTTTCCCCTC
TCTCACTTACTTTCTTTCCCCCCCCCTCTTTCCTTTCTTCTC

ACTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGCCCTCTGTTCTGTACAGGATACAACTGT
TTGACATGCTTGCTCTCTCATTCTAGAAAATGCTAGAAGGATGAGTGTGG
AGAGGCTACATGAAGGCCTGTAGGATGTGAGAGTTTCATGCTGGATACAT
GTTCTCTTCCTTCCACCCTCTTCTGCCTAAAGCCAATGGACAGCTCCAGG
GAGGACAAACTTTCCTACTGCTATAAATTAGGCAAATAAAATGAATTGGT
ACTTAGACTCCACCATGTTTCTAAAAATAACAACAGTTAACAATTACCCC
TAAAACTGCTTGTTAGAATGTCTAACACTCTTTCCAAAATAGTAGTTAGA
AGTGCTGTTGAATCATTAATTAATCCTTGAAGCCACCTGTTATTATCATA
AAGACTTCCCTAGTGACAGAGTTCTGTGTGGTTAATGTCTGTCATAGATA
TAGCTTACTTTTACATAATTCCTGAAAAAACATATAAATATAATTCGCTA
AATTGCATAATTGTCATGGGGAGAATTTTTAGCTCAGAAAAAGAAAAACA
ATATATACTGTGTCCATTGGAAGGNGTGACAAGAATTAAACAGCCTGAGC
AAGAATTGATTACTTCATCTGCTAAACAGATTTAATAAATCTTACTCCTT
GAATTTTTGTAGNTACATCTATATTGTCTTAGTCATTAA

Query= MSMg01no301_b20.g1 MSMg01no301_b20.g1 CHROMAT_FILE:
MSMg01no301_b20.g1 PHD_FILE: MSMg01no301_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:26 2005
         (637 letters)



>mm_chr4_5891119_5892157
          Length = 1039

 Score = 1149 bits (594), Expect = 0.0
 Identities = 627/639 (98%), Gaps = 2/639 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccctctgttctgtacaggatacaactgtttgacatgcttgctctctcattctagaaaa 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agccctctgctctgtacaggatacaactgtttgacatgcttgctctctcattctagaaaa 260

                                                                       
Query: 61  tgctagaaggatgagtgtggagaggctacatgaaggcctgtaggatgtgagagtttcatg 120
           ||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||
Sbjct: 261 tgctagaaggatgagtgtgaagaggctacatgaaggcctgtaggatgcgacagtttcatg 320

                                                                       
Query: 121 ctggatacatgttctcttccttccaccctcttctgcctaaagccaatggacagctccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggatacatgttctcttccttccaccctcttctgcctaaagccaatggacagctccagg 380

                                                                       
Query: 181 gaggacaaactttcctactgctataaattaggcaaataaaatgaattggtacttagactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggacaaactttcctactgctataaattaggcaaataaaatgaattggtacttagactc 440

                                                                       
Query: 241 caccatgtttctaaaaataacaacagttaacaattacccctaaaactgcttgttagaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caccatgtttctaaaaataacaacagttaacaattacccctaaaactgcttgttagaatg 500

                                                                       
Query: 301 tctaacactctttccaaaatagtagttagaagtgctgttgaatcattaattaatccttga 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctaacactctttcaaaaatagtagttagaagtgctgttgaatcattaattaatccttga 560

                                                                       
Query: 361 agccacctgttattatcataaagacttccctagtgacagagttctgtgtggttaatgtct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agccacctgttattatcataaagacttccctagtgacagagttctgtgtggttaatgtct 620

                                                                       
Query: 421 gtcatagatatagcttacttttacataattcctgaaaaaa--catataaatataattcgc 478
            |||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |
Sbjct: 621 atcatagatatagcttacttttacataattcctgaaaaaaaacatataaatataattcac 680

                                                                       
Query: 479 taaattgcataattgtcatggggagaatttttagctcagaaaaagaaaaacaatatatac 538
           ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 taaattgcataatggtcatggggagaatttttagctcagaaaaagaaaaacagtatatac 740

                                                                       
Query: 539 tgtgtccattggaaggngtgacaagaattaaacagcctgagcaagaattgattacttcat 598
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtgtccattggaaggggtgacaagaattaaacagcctgagcaagaattgattacttcat 800

                                                  
Query: 599 ctgctaaacagatttaataaatcttactccttgaatttt 637
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctgctaaacagatttaataaatcttactccttgaatttt 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1039
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1029
Effective search space:   645183
Effective search space used:   645183
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)