BAC Information

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BAC

Clone NameMSMg01-301M05
Chromosome4 (Build37)
Map Location 76,348,545 - 76,348,738
singlet/doubletsinglet
Overlap geneLOC667858
Upstream geneLOC100039884, LOC667845, Ptprd
Downstream geneLOC667862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301M05.T7 (MSMg01no301_m05.b1)MSMg01-301M05.TJ (MSMg01no301_m05.g1)
ACCAG427861AG427862
length733740
length of high quality
(start - end)
194 (120 - 313)443 (68 - 510)
definitionCHROMAT_FILE: MSMg01no301_m05.b1 PHD_FILE: MSMg01no301_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:14 2005CHROMAT_FILE: MSMg01no301_m05.g1 PHD_FILE: MSMg01no301_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
CACAGAATCTGAGGGCCTGCTCTGTGACAGGCCGTTCTCTACCTACTAAG
ACGTGTGTGATCTGACCCAGGAAATAAATGATGAGTTCCATGGCCTGAAG
GGGCTCATACTACACAGTAGGATTTATCCCTTTGATAACCGCAGACCTGG
GAATGAAGTGTTAAAGGAGAGGTCAACTGGTAATGGAATTCAGACTATAG
CAGAGTGTTAATAGAGTAGAAGATCAAATTAGAAAAAGCCTCTGCATGTG
TGGTTTGATAGCATATTGTAGTGACACTAATGGATCAGACACCAGTCTTT
CACTGTNATTTGTTTGCCCCCCCCCCCCACTGAGAAATGTGACTGGTAAA
GTACACTGGGGCAAAGCTTGATGAAGATCTGACCACACTGCTTTACAGTG
GCCAGCTTGTCTAAGAATATTGTCAGTTCCACTACTGATAGCCATCATAC
TGCTGTATCACCTATGCATGTGTATTTGGATTATACTTCATGGGATTATA
TATATATATTATTCCCCATTTATACTATCAGAAACATAAGAGAAGTTGGC
CCTCAAGAGGTTCTAGAATGAATCGAGAGAATATGTAGATTGTCTGAGGT
AGGACTCACGTATGGCATACCAGCTGTTCATTTGCATGGTTTGTTGTCCC
AACCTCATCTTATTATGACCTGTCTTCCTCTTT
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTCAATGGG
GTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGG
ATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCT
CTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGTCTTGCAGAAGCT
GGCTGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATA
CCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACAC
ATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGA
AAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAACATGTGGTAC
ATTTACACTATGGAGTACTACTCAGCTATTAAAAAAAATGAATTTATGAT
ATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAA
CACATTTTCAAAGGAACTCACATAATATGTACTCACTGATAAGTGGATAT
TAGCCCAAAACGTAGGATACCCATTATATAAGATACAATTTGTTACACCC
ATGATACTCACTACCAATGAACACTGATTTGTGGATTTTTATCCCCTCCT
TAAAATTGGGAATTATTCACCTATTGTAAGTAGTTTCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_m05.b1 MSMg01no301_m05.b1 CHROMAT_FILE:
MSMg01no301_m05.b1 PHD_FILE: MSMg01no301_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:14 2005
         (194 letters)



>mm_chr4_76348345_76348938
          Length = 594

 Score =  368 bits (190), Expect = e-106
 Identities = 193/194 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaaataaatgatgagttccatggcctgaaggggctcatactacacagtaggatttatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ggaaataaatgatgagttccatggcctgaaggggctcatactacacagtaggatttatcc 335

                                                                       
Query: 61  ctttgataaccgcagacctgggaatgaagtgttaaaggagaggtcaactggtaatggaat 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ctttgataactgcagacctgggaatgaagtgttaaaggagaggtcaactggtaatggaat 275

                                                                       
Query: 121 tcagactatagcagagtgttaatagagtagaagatcaaattagaaaaagcctctgcatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tcagactatagcagagtgttaatagagtagaagatcaaattagaaaaagcctctgcatgt 215

                         
Query: 181 gtggtttgatagca 194
           ||||||||||||||
Sbjct: 214 gtggtttgatagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)