BAC Information

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BAC

Clone NameMSMg01-301N23
Chromosome4 (Build37)
Map Location 122,539,882 - 122,540,197
singlet/doubletsinglet
Overlap geneCap1
Upstream geneLOC666931, LOC666937, LOC633269, LOC633279, 9530002B09Rik, Ppt1
Downstream geneMfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301N23.T7 (MSMg01no301_n23.b1)MSMg01-301N23.TJ (MSMg01no301_n23.g1)
ACCAG427935AG427936
length732736
length of high quality
(start - end)		321 (48 - 368)656 (79 - 734)
definitionCHROMAT_FILE: MSMg01no301_n23.b1 PHD_FILE: MSMg01no301_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:22 2005CHROMAT_FILE: MSMg01no301_n23.g1 PHD_FILE: MSMg01no301_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTTTGCCCTTGATTTGCAATGTTGTGTTGACACACTTGTAGATGTA
AGCCACCTGCTTCAGCTCAGTGTCATCGATCACCAGGTTGGAAACATTCT
CCTGGTTTTCCTGATGAAGACACAACCAGGATTCTTACCACAAAGGTCAC
GTCATCCCAAACCTTTGTTCTCCCACCAAGAGCCAGACCCCCGCACTCTT
CAGCTAAGCTCTGCTGAAAGCCTTCTTCCTAGTCCCTTCCCGGAGTCAGG
CTGCTTTAACTCACCACTCTCCATTTCTTGCCTTCCAGTTCCAGCAGAGC
TGGTTCCTTCTTTGTGGCTGGTTTGCGCGCAGGCGCTAGTTTGGGGTTTA
GGTGCAGAGAATGGTTTGGGGCCACTCCGAAATGGACCGCTCTGAGCTTT
CAGGGCAGGGTTCTTGTGAGTCTTCATGTCATCAGATACATGTTTCAGGG
CTGTAAGAACACACCACAGCTACCTCGTTCCTGCTCTTCATACCAGAGCT
TCGGGCTGAGGCAATAAACAAGGTCTGCTATTACTAGTCCTTAGCAGAAA
CTTCAAAGCAAGAACTCAAGCTCTTGAGAGACCATCTTGCAAACCTTTGG
AGAACTGCTTTTATGGTTTCACTTGTCCTCTAACTTATATAGTTTAATTT
ACAAAAATAGTATGTGTTGATTTTGATTAAAG

TTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTATTTGCGTGTGCATG
TGTAGTTGTGTACAGGTGCCCATGGAGGCCAGAAGAGGACATTGGATCTC
CTGAAGCCGAAGTTACAGGCACTTGTGAACTGTGGGTGACCATGGTACTG
GGAACTGAACTTGGGTCCTCTGAAAGAGCATCAATTGTTAAGTGTCCTTA
ACAGTTGAGCCCATCTCTCTAGCTCTCTGTCAAAGGCCAGCTTTGACACC
ACAGGGTAAACCAAGGCAGGCAGTGAAGTGTGACAGCGGTGATCACGGTC
AGTGCTGATGGCAGCTGACTGGGGTCAGTGCTAACAGCAGCTGATGGGGG
CTGCTGCTGGTGGCAGCCAGCTATTAGAGAAAGGGGGGGATCAAACACAC
ACACACACACACACACACACACACACACACACACACACACGCACACGCAC
ACGCACACGCACACACAGAAGCAGTATCAGGTTCTAGCCTTTTATTTTTT
TCTCTTAACCCTTTTTATATCCCTAACACAAAGTTTTTCTATTTAGAAAG
AAAGTTACCTCGTAGCCACAAACTAAACAATGACCACAAATACATATTCT
TCAAAAACAGATTAAAATCATTACATAAGAGGAAATTATGACAGGAATAT
CATTTTTTTGAGACTTACATCTAACTAAACAATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_n23.b1 MSMg01no301_n23.b1 CHROMAT_FILE:
MSMg01no301_n23.b1 PHD_FILE: MSMg01no301_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:22 2005
         (321 letters)



>mm_chr4_122539677_122540397
          Length = 721

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattttgcccttgatttgcaatgttgtgttgacacacttgtagatgtaagccacctgctt 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattttgcccttgatttgcaatgttgtgttgacacacttgtagatgtaagccacctgctt 265

                                                                       
Query: 66  cagctcagtgtcatcgatcaccaggttggaaacattctcctggttttcctgatgaagaca 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cagctcagtgtcatcgatcaccaggttggaaacattctcctggttttcctgatgaagaca 325

                                                                       
Query: 126 caaccaggattcttaccacaaaggtcacgtcatcccaaacctttgttctcccaccaagag 185
           || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 326 cacccaggattcttaccacaaaggtcacatcatcccaaacctttgttctcccaccaagag 385

                                                                       
Query: 186 ccagacccccgcactcttcagctaagctctgctgaaagccttcttcctagtcccttcccg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ccagacccccgcactcttcagctaagctctgctgaaagccttcttcctagtcccttcccg 445

                                                                       
Query: 246 gagtcaggctgctttaactcaccactctccatttcttgccttccagttccagcagagctg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gagtcaggctgctttaactcaccactctccatttcttgccttccagttccagcagagctg 505

                           
Query: 306 gttccttctttgtggc 321
           ||||||||||||||||
Sbjct: 506 gttccttctttgtggc 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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