BAC Information

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BAC

Clone NameMSMg01-302D19
Chromosome4 (Build37)
Map Location 89,191,779 - 89,192,184
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1, LOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785
Downstream geneDmrta1, Zfp352, LOC619842, LOC435792
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302D19.T7 (MSMg01no302_d19.b1)MSMg01-302D19.TJ (MSMg01no302_d19.g1)
ACCAG428196AG428197
length733733
length of high quality
(start - end)
313 (44 - 356)587 (73 - 659)
definitionCHROMAT_FILE: MSMg01no302_d19.b1 PHD_FILE: MSMg01no302_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:49 2005CHROMAT_FILE: MSMg01no302_d19.g1 PHD_FILE: MSMg01no302_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTC
AGGGGTCCACCTTCTTGAGTTCTTTATCTATATTGGATATTAGTCCCCTA
TCCAATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
GTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAACTTTATGAG
GTCCCATTTATCGATTCTTGATCTTACAGCACATGCCATTGCTGTTCTAT
TCAGGAAATTTTCCCCAGTACCCTTATCTTCGAGGCTTTTTCCTACTTTC
TCCTCTATAATTNGCATTGNCTNTGGAACAANGACCAGTTGCTTAATCTA
NTTAGATTTGANCTTAGNNCNAGAAGNTNGAAATGGNTAAATTCGCGTTT
GTCTACATGATAACAGCCAGTTGTGCCAGCACCACTTGTTGAAAATGCTG
TCTTTTTTCCACTGGATGGTTTTAGATCCCTTGTCAAAGATCAAGTGAAC
ATAGGGATGTGGGTTCATCTCTGGGTCATCAATTCTGTTCAATTGGTCTA
CTTGTCTGTCTCTATACTAATACCATGCAGTTTTTATCACCATTGCTCTG
TAGTAAAGCTTTTATGTCAGGCATGGTGATTCCTCCATAGGTTCTTTTAT
CCTTGTAAAGAGTTTTTGCTATCCCTCTTGTTT
AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTCGGCTTAATTCCTTGTAAGGAACAC
ACTGTGCCACACAAGGAAAGCTGCAGAGTGGCCACAACTGGGTCAACTAA
ACTGATAAGCTGAGAGTCATTTTGAGAGAGACTCAGACATAAGAAGAACT
CTATGGTAATAGAAAGAGTCTTTTTTTCCTGCTTTATAATGATTTACTAG
GCTGTACATTGCTCTTATTGTTTTCTGGGACTACAAGGTGTTAGTAATAA
ATGTCTCTAAGATAAATGTATAAACAATAGTTGTCCATTGCTGAAAATTC
AGCTAATGGAGAACACAAGTTATCATTTTTGAGAGGTTTTCATATTTTCC
ATCTTCCAGTAAAAATTGATTTTCAAAAATAGGCTAAGCCCAAGATTTAG
CCATAGGCTGTAGTTTTCTAACCTCTGGTTTGAGTTGGTAACTCTTTATG
CTGGCTCTTTCAAATAAGAGAAAATTTAGTGTAATGCAATTCGTGTAAAA
ATAAATAAAATTTAAGGTTAATTCATTTAATTTAAAATTCACTTTATGTA
ATCTAGAATGTAATTTTCTTTAACAATACTTTTATTTATTTATTTTTTAA
ATCAATTTATTCTTTCATATCCTAACCACAGTATTTTCCTGTGGNGAGCG
TGTGTGGCGNCAGTCCCAAAGGCGCCAGAGACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_d19.g1 MSMg01no302_d19.g1 CHROMAT_FILE:
MSMg01no302_d19.g1 PHD_FILE: MSMg01no302_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:50 2005
         (587 letters)



>mm_chr4_89191588_89192574
          Length = 987

 Score =  652 bits (337), Expect = 0.0
 Identities = 385/409 (94%), Gaps = 15/409 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcggcttaattccttgtaaggaacacactgtgccacacaaggaaa---------gctg 51
           |||||||||||||||||||||||||||||||||||||||||||||||         ||||
Sbjct: 192 tctcggcttaattccttgtaaggaacacactgtgccacacaaggaaagctctaagggctg 251

                                                                       
Query: 52  cagagtggccacaactgggtcaactaaactgataagctgagagtcattttgagagagact 111
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cagagtggccacaactgggtcaactaaactgataagctgagagtcattttgagagagact 311

                                                                       
Query: 112 cagacataagaagaactctatggtaatagaaagagtctttttt---tcctgctttataat 168
           |||||||   |||||||||||||||||||||||||||||||||    |||||||||||||
Sbjct: 312 cagacat---aagaactctatggtaatagaaagagtcttttttcccccctgctttataat 368

                                                                       
Query: 169 gatttactaggctgtacattgctcttattgttttctgggactacaaggtgttagtaataa 228
           |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gattgactacgctgtacattgctcttattgttttctgggactacaaggtgttagtaataa 428

                                                                       
Query: 229 atgtctctaagataaatgtataaacaatagttgtccattgctgaaaattcagctaatgga 288
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 atgtctctaaaataaatgtataaacaatagttgtccattgctgaaaattcagctaatgga 488

                                                                       
Query: 289 gaacacaagttatcatttttgagaggttttcatattttccatcttccagtaaaaattgat 348
           ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 489 gaatacaagttatcatttttgagaggttttcatattttccaccttccagtaaaaatcgat 548

                                                            
Query: 349 tttcaaaaataggctaagcccaagatttagccataggctgtagttttct 397
           ||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 549 tttcaaaaataggctgagcccaagatttaaccataggctgtagttttct 597


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)