BAC Information

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BAC

Clone NameMSMg01-302H24
Chromosome4 (Build37)
Map Location 83,162,906 - 83,163,196
singlet/doubletsinglet
Overlap genenone
Upstream geneZdhhc21, Cer1, Frem1, LOC667985, 1810054D07Rik, Snapc3, Psip1, LOC100040611
Downstream gene4930473A06Rik, LOC668010, Bnc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302H24.T7 (MSMg01no302_h24.b1)MSMg01-302H24.TJ (MSMg01no302_h24.g1)
ACCAG428372AG428373
length769765
length of high quality
(start - end)
713 (40 - 752)290 (68 - 357)
definitionCHROMAT_FILE: MSMg01no302_h24.b1 PHD_FILE: MSMg01no302_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:09 2005CHROMAT_FILE: MSMg01no302_h24.g1 PHD_FILE: MSMg01no302_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AATAATTCTAGCCAGAAAGTTTAAAGAGATGGTTTTATTTGTTTTGTCAG
AAAGATGTAATAAAGTTAGAATCAGGAATAGAAGGTGCCCCTTCCTCATA
GAATAGTAAGTAAAGGCTGCATTATAAGGCATAAAATGAGTTTTCATAAA
TTACAATAAGAAGAGAAATAGACTTGGAACAAATTTGTGATCAAGGAAAA
ACATTCTTTATAGGTCAGATCCAAGAATGAAGCCGCAGGTGTGCACTATG
ATAAAGCAAGGCCAGTGGAACTGTTTCTTTGAACTTATAATGAGCTTACA
GAATGAAACACTGTTTTGAACTTAATATCAACATCCCTTTGTAACTCCCC
CTTTGTGTACCATTTCATCTATGAGGTAATTTTATAAAGAACATTTTCTA
AGAAGGTGTCAAAAGGCTGAGAGAAGAAATAAAGTGTGGCTTTTGGGGCT
CTGCCCATTCTGCTAAATGTATATATGTATATGCCCGTCTATAGATTTTT
TTTTCCTTAAAATGTCTACTAGTATGAAGTATGGGGTCCTTGAAAAACTA
AAAATTAAGACAGGAGTTAAATTGCCAGAAGCCAGCAGCTTTTGGCCACA
GAATAGCCAAGAGTTAAAAAAAAGGCATAAATTGCCCAAAGTAAGCAGGT
TTTGGCCACGCAATCGCCGATAGAAATTGCCTAAGGTAAAGCAACCTTGG
CCACGATGTCCAACTCTAT
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTGTTCTCACATGTGGGGAGGGCATACGCATGT
GCACACACCCGTGTGCAGAAACACGTTCTTTTTAAATAATTTAGTATTAA
TGGAGTTCTGTAATCTTATCAATGAGAAAGACTTGATGGGCTGATTTAAG
TTTTAAATTCCTTATGTTCAGTCGGCTTATCTGTAAGTTACTATGTGTTT
TTCCTTGTTTTCATTTTATGTGTTTGGGTGTTTTTCCTCCATGTCTGTCT
GTGCACCATGTTCATGCACTGCCCATGGAAGCCAGAAGAGGATGTCAGAT
CCCCTGATTCTTTTGTTCCCCCTCCCCGCGAGCTGCCGTGTGGGTGCTGG
AAACTGAACCCTGCCCCCCTGGACAAGTAACCAGTGCTCCTAACTGCCGA
GTCATCTCTGCAGCCCCTAATTTGCTATTTGAAAAATTGGAATTTGTATT
TCTCTTTCTGCAACCAAATGAGTTACTTGCTCTAGACTTTTGGTATACTT
ATAAATCATTTGGCAAGATTTTTTTTTAGAGAGTTGATAAACTGGGGGAC
TGATATTGGGATATAAAGTGAATAAATCATTAAAAATTTAAAACAGAGTT
TACAAACTAATAATCCTTTACCTTAACTGCCATAGGTAATATTTTACTAT
TTGTCAATGTGACCTGGAGATTGACGCCATGCTCTCACATTTGCTAAGTC
CATCTTTCATTTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_h24.g1 MSMg01no302_h24.g1 CHROMAT_FILE:
MSMg01no302_h24.g1 PHD_FILE: MSMg01no302_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:09 2005
         (290 letters)



>mm_chr4_83162809_83163499
          Length = 691

 Score =  555 bits (287), Expect = e-162
 Identities = 290/291 (99%), Gaps = 1/291 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgttctcacatgtgggga-gggcatacgcatgtgcacacacccgtgtgcagaaacacgt 59
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ctgttctcacatgtggggaggggcatacgcatgtgcacacacccgtgtgcagaaacacgt 329

                                                                       
Query: 60  tctttttaaataatttagtattaatggagttctgtaatcttatcaatgagaaagacttga 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tctttttaaataatttagtattaatggagttctgtaatcttatcaatgagaaagacttga 269

                                                                       
Query: 120 tgggctgatttaagttttaaattccttatgttcagtcggcttatctgtaagttactatgt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tgggctgatttaagttttaaattccttatgttcagtcggcttatctgtaagttactatgt 209

                                                                       
Query: 180 gtttttccttgttttcattttatgtgtttgggtgtttttcctccatgtctgtctgtgcac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gtttttccttgttttcattttatgtgtttgggtgtttttcctccatgtctgtctgtgcac 149

                                                              
Query: 240 catgttcatgcactgcccatggaagccagaagaggatgtcagatcccctga 290
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 catgttcatgcactgcccatggaagccagaagaggatgtcagatcccctga 98


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 691
Length adjustment: 9
Effective length of query: 281
Effective length of database: 682
Effective search space:   191642
Effective search space used:   191642
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)